PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 1401aa MW: 151728 Da PI: 9.2353 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.4e-08 | 619 | 663 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++WT++Ed l +v++ G g+W I r+ + +Rt q+ rw EMT20798 619 KAWTKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 663 68*******************************99**99999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53335 | 1.41E-104 | 1 | 310 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.1E-73 | 1 | 113 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF03492 | 2.1E-115 | 1 | 310 | IPR005299 | SAM dependent carboxyl methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.1E-73 | 146 | 174 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.1E-73 | 213 | 261 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 612 | 670 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.508 | 613 | 671 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.1E-11 | 616 | 669 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-7 | 617 | 669 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-6 | 619 | 663 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.94E-12 | 624 | 668 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0032259 | Biological Process | methylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1401 aa Download sequence Send to blast |
MTIVDLGCSS GGNTLLFVSN VIEAVSHHLE KIGGHPAELQ FFLNDLPSND FNRVFRSVQR 60 FKNSIGMGRH KGEEIPAFFI TGLPSSYYTR LLPRSSVHLF HSSYCLHWRS RLPDGLEGKK 120 RPYLNEGNID IAMTTPPSVV KMYQEQFQKD MLLFLRLRYE ELFAGGQMML TFLGRKHGDA 180 YNGGLCRLHG LLSRSVQSLV DEGLVEKEKL DSFNLPLYGP SMEEVKAVVE QSQQFRMNHI 240 KLFETNWDPY DDSEGNDVHD SVQSGINVSK SLRAVMEPLF ASHFGESVLD KLFKKFAYNV 300 EVHLEMEKTK APDKRNCTLD EARTDDIPQV MTKKNDIQME HDKAPCPDDF HTEFYPNFWD 360 VIKTDLMELF KFLHVGQLNL SRLNFEEIVL FTKNKEEDDR IQTYRPIRLL NVSFKIFIEV 420 TINRLNVVFN HVVRPSQTTF MQRRDILDGI GDESDLECEI EPSPKPSNEA AAEASRFAKG 480 FVSIPFRASI ILYIHAYVLI KTHPTNGYIA PNDQNNSILY LVENFKGCHI PNYLITMILM 540 YGPSREQGSS HRANSDVPLL NTPNEKIPRV SSDKQLAQSH RLTNGTGPVS NSKQAPHTGL 600 SPDSFDGNGP HNKKTKKTKA WTKDEDAELM AGVHKCGEGN WLDILRKYNF DSTRTYGQLS 660 QRWAVISKRQ ATTKPAKAKP VTGGYDMKAT QKAFFMALDM PMGKPGGLST LRSGASQQST 720 QHPAPVFGAA APELKSATSS SSFSLPVPVV PSAAPGPVSA QVQVQPRVQQ APSQAAPSKV 780 SNASIKSRNS SKKQTAQANL TNAPSSIQAA AIAAGGRIAT ASIATNLLKA AQSPQAVHIR 840 SRGKGSSKTS TSSKASTVAG EPGTQTGSAQ HSELPNSSAP IPSPTVLITQ STEQVNVVPE 900 VAGVNPPEQS ASAHLLEPDR ALSTTPVPGP CDNMEIDDDS TFCVVTMEDL FPEDVKQPET 960 VSQPETVRLP EMVRQPETVR QTETVSQPET VRQPEMVRQP ETVRQPEMVK QPEMVDPKAE 1020 EMIDPKDADM LEFDRFVAQG CLTTDYSDKS KGVKIAPGAQ GATASQKKKQ LPTVGKSIPV 1080 FRAPVTMKKT KALPSHGATL ASTVASSGLV GTGNAGVLSK AIYRKPAGPG TTGKQNRCQE 1140 IMAQKQHAMN SNSSAMARNA APGTGTPARN VAAGVGAPAR NMAPATGTPA KIRNTAPATG 1200 TPPVRNTAPG TGTPPVRNTA PGTGAPPVRN TAPGTGTPAV RNTAPGTGTP ARNSLTGTGT 1260 PPARNLLTST GTPPARNAAP VTGAPPARNL LTGTGTPPAI RQHNPAPGRD HQVRCRATCP 1320 ESVDSLSPLR VAFNLVWSWL ACPWTAAAGM GSAVERVAPL EDMDGDQGAI CLRPCGRANN 1380 KAYKPGQQLR NNCGLEQSIK A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m6e_X | 5e-67 | 1 | 310 | 53 | 346 | S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370818 | 0.0 | AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186656.1 | 0.0 | mucin-5AC-like isoform X1 | ||||
TrEMBL | M8BGF9 | 0.0 | M8BGF9_AEGTA; Benzoate carboxyl methyltransferase | ||||
STRING | EMT20798 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 9e-11 | MYB_related family protein |