PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | CPP | ||||||||
Protein Properties | Length: 803aa MW: 87168.5 Da PI: 6.9717 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.3 | 4.6e-16 | 479 | 517 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk EMT20592 479 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 517 689**********************************96 PP | |||||||
2 | TCR | 49.2 | 1e-15 | 564 | 603 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce CkN+ EMT20592 564 RHKRGCNCKKSSCLKKYCECYQGGVGCSNNCRCETCKNTF 603 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.6E-17 | 478 | 519 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.145 | 479 | 604 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.1E-12 | 481 | 516 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-15 | 564 | 605 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.5E-11 | 566 | 602 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MGSEFSTTQQ YMPLTVTVQD SPLFSFINSL SPIEPLKSAY SGNGLQAYHQ SLNVTSVSSI 60 FTSPHHNAHK ESKLSKSSFA DYTENELCME DGTDKNKSPT SSTAVRLFAC TSTITRESHT 120 MITCSVNEGI VDPPKGPNDF PQPGRFDSGS PDHNTAPCHG VSVRSDLKQD KCPKLETVQT 180 TNNTVEKRKC LFSSDMQLQD GCQPAKENNE VMGCEWEDLV SVTSGELLAF DSSMDQHHTG 240 VQLAVNNAES CGYLLSKLAG GADISDRTHP ATSSQAYYHE MVVGEDKTEN GQLFPEDKKT 300 ILSEEIQDNI NEENACIPLG CKVETQQRGV RRRCLVFEAA GYSHRTVQKE SVGDLSFSTC 360 KGKSSAQNHR NPGKTPSPHV FRGIGLHLNA LALTSKDKMA CQDPLATALV PSLKTEQDVH 420 GNLLSAGGNF VHSGSGLLDL QMDNDDCSVG GFLGNDHNSS QSSSPPKKRR KSDNGDDDSC 480 KRCSCKKSKC LKLYCECFAA GVYCSEPCSC QGCLNKPIHE EIVLSTRKQI EFRNPLAFAP 540 KVIRMSEAGQ ETQEDPKNTP ASARHKRGCN CKKSSCLKKY CECYQGGVGC SNNCRCETCK 600 NTFGTRDVAV SAENEEMKQE GDQTESCEKE KENDQQKANV HSEDHKLVEL VVPITPPLDV 660 SSSLLKQPNF SNAKPPRPCK ARSGSSSRSS KASETVQSRK ISKVGDSVFI EEMPDILREP 720 SSPGIVKTCS PNGKRVSPPH NALSISPNRK GGRKLILKSI PSFPSLAGDT NGGSAICSSD 780 SATALALGQA YSLCRHDMSF VFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-15 | 481 | 601 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-15 | 481 | 601 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 465 | 471 | PKKRRKS |
2 | 466 | 470 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375097 | 0.0 | AK375097.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085F14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167196.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | R7WCV2 | 0.0 | R7WCV2_AEGTA; Uncharacterized protein | ||||
STRING | EMT20592 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-91 | TESMIN/TSO1-like CXC 2 |