PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT20495

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 303aa MW: 34320.6 Da PI: 10.038

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20495	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.5	5.5e-49	33	159	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101 +pGfrFhPt+eel+ +yL++kv+gk++++ + i++vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v++ +++ +g EMT20495 33 MPGFRFHPTEEELIEFYLRRKVDGKRFNI-DLIASVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVVeGNRSIG 132 79*************************.99***********888889********************************9988757888 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy g+apkg +++W+m+eyrl EMT20495 133 LKKTLVFYVGKAPKGLRSSWIMNEYRL 159 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.074	32	179	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-57	32	179	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	34	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGGSVPDHHQ QQHDGEVDGG QLQHGGEHVE TVMPGFRFHP TEEELIEFYL RRKVDGKRFN 60 IDLIASVDLY RYDPWDLPAL ASIGDKEWFF YVPRDRKYRN GDRPNRVTPS GYWKATGADR 120 MVKVVEGNRS IGLKKTLVFY VGKAPKGLRS SWIMNEYRLP HGETERYQKE ISLCRVYKRP 180 GIDDNFHLTG TTTRSPGSRA AATRHSTAAH RTSVATHRQQ PPVFVEGGGH HSSSALKAYN 240 AHTTQGTMQP APWHHCRRQR QGAPPPAMFG RGLCSLAELH DLDRGGWHIA LPPPPQRTQQ 300 PRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	34	179	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	34	179	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-53	34	179	22	168	NAC domain-containing protein 19
3swm_B	4e-53	34	179	22	168	NAC domain-containing protein 19
3swm_C	4e-53	34	179	22	168	NAC domain-containing protein 19
3swm_D	4e-53	34	179	22	168	NAC domain-containing protein 19
3swp_A	4e-53	34	179	22	168	NAC domain-containing protein 19
3swp_B	4e-53	34	179	22	168	NAC domain-containing protein 19
3swp_C	4e-53	34	179	22	168	NAC domain-containing protein 19
3swp_D	4e-53	34	179	22	168	NAC domain-containing protein 19
4dul_A	4e-53	34	179	19	165	NAC domain-containing protein 19
4dul_B	4e-53	34	179	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY672069	0.0	AY672069.1 Hordeum vulgare subsp. vulgare NAC transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156931.1	0.0	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	4e-91	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	R7WG08	0.0	R7WG08_AEGTA; Putative NAC domain-containing protein 94
STRING	EMT20495	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	2e-93	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]