PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Nin-like | ||||||||
Protein Properties | Length: 239aa MW: 27292.9 Da PI: 4.8569 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.9 | 3.6e-27 | 113 | 162 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+k l EMT20433 113 RVLTFELVSQYFYMPITQAARELNVGLTVLKKKCRELGIPRWPHRKLKNL 162 6699*******************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.44 | 99 | 182 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.9E-22 | 115 | 161 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDSNGEHSFW PYGPSVWHDS YLLEDEALLC SLPFLSFGCQ PLCSNSPAVA QSSSLQGELD 60 TSFDDDLLRC WEAIEQSDDS TEDSGKGLPL LCYGEESGAA SNAMRADRVR SERVLTFELV 120 SQYFYMPITQ AARELNVGLT VLKKKCRELG IPRWPHRKLK NLQTLINDVE VLQEAGKAND 180 GEQLRAMVEM LEQERRLLEQ RPYVELEEKT KRLRQACFKA SYKKRRLLVL EPGEASKYY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 1e-41 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 1e-41 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 1e-41 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-41 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164800.1 | 1e-177 | protein RKD4-like | ||||
TrEMBL | N1R1N7 | 1e-176 | N1R1N7_AEGTA; Uncharacterized protein | ||||
STRING | EMT20433 | 1e-177 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 7e-38 | RWP-RK domain-containing protein |