PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20412
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YB
Protein Properties Length: 281aa    MW: 29686.3 Da    PI: 5.6394
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20412genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB112.13.2e-352292171
     NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwal 71
              vreqdr++Pianv+rim+++lPa+akis+dake +qecvsefisfvt+ea+++c+ ++rkt+n++d++  l
  EMT20412 22 VREQDRLMPIANVIRIMRRALPAHAKISDDAKEAIQECVSEFISFVTGEANERCRMQHRKTVNAEDIVVFL 92
              69****************************************************************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.42E-251594IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.3E-331889IPR009072Histone-fold
PfamPF008081.5E-222988IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.9E-85674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.9E-87593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENDGVPNGP AAPAPTQATP VVREQDRLMP IANVIRIMRR ALPAHAKISD DAKEAIQECV  60
SEFISFVTGE ANERCRMQHR KTVNAEDIVV FLHRMRDPEA GTGGAAAGDS RAVTSAPPRA  120
APPVTPAVPL RAQRPMYAPP APVQVQNQMQ RPGYAAPAPV LVQNQVQRPV YAPPALVQVQ  180
MQRGIYGPRA PVHGHSVGMA PMRANVGGQY QVFGGEHVMA QQYYGYGYEE GAYGAGSSNG  240
GAVIGDEESS SNGVPAPGEG TGEPEPEPAA EESQDKPVQS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-352297697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787341e-174KM078734.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178161.11e-179nuclear transcription factor Y subunit B-8-like
TrEMBLR7WCI40.0R7WCI4_AEGTA; Nuclear transcription factor Y subunit B-6
STRINGEMT204120.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-36nuclear factor Y, subunit B6