PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20218
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 228aa    MW: 24099.3 Da    PI: 5.3034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20218genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-08126166954
               HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  EMT20218 126 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 166
               69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.859117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-12123171No hitNo description
SuperFamilySSF474591.96E-13124177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5126166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-11127175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDPGFCNDMI LSESAWNSGG GDGGAAGDVV HVVDGSGMTV LERLVLDEAL AAAIMELQGI  60
QVPCGGGKPM AGGLEAARLA FGATGTGPVT PAYAEVDGVV LQRQQHQHRH QGVMGMPADY  120
DLPVAARQRR ERISERLRVL QKLVPGGAKM DTASMLDEAA NYLRFLKSQI RELQTLDRRN  180
YGANAISNTG MAPLMSYNNM PAFAFPATGA GETLGGGGEE AFMSSRFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-180HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201013.11e-59transcription factor SPATULA-like isoform X1
RefseqXP_020201014.11e-59transcription factor SPATULA-like isoform X2
TrEMBLR7WDI31e-165R7WDI3_AEGTA; Transcription factor bHLH87
STRINGEMT202181e-166(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-13bHLH family protein