PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20148
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 146aa    MW: 16368.3 Da    PI: 10.2683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20148genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13243955
              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              E +RRdriN+++++L++l+P++      K +Ka++L ++++++k+Lq
  EMT20148  2 EVKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIDHLKQLQ 43
              779******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003533.3E-11148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-12147No hitNo description
PROSITE profilePS5088815.288142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-15269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-14255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEVKRRDRIN QKMQTLQKLV PNSSKTDKAS MLDEVIDHLK QLQATVQMMN RMSSMMMPMA  60
MPQLAQMSVM ANMAQMAQMA QMGLGMMNMA GPLAQPAYTG LTQPMMHAST PFQQQAQPNG  120
MEAYSRMMAM CQKLSQQQTQ PGSSKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614201e-141AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678141e-141AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164233.11e-60transcription factor UNE10 isoform X2
TrEMBLR7WDE13e-98R7WDE1_AEGTA; Transcription factor UNE10
STRINGEMT201485e-99(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-19bHLH family protein