PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20063
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 438aa    MW: 49525.5 Da    PI: 6.7175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20063genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000464467223
              EETTTTEEESSHHHHHHHHHH..T CS
   zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
              +C dCgk+++++ +   H ++  H
  EMT20063 44 VCADCGKPCRSQTEVDLHKKRtgH 67
              7*****************998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.101.2E-1095152No hitNo description
SuperFamilySSF469341.47E-16101160IPR009060UBA-like
CDDcd142902.59E-21106154No hitNo description
PROSITE profilePS5003011.222106147IPR015940Ubiquitin-associated domain
PfamPF006276.0E-6108144IPR015940Ubiquitin-associated domain
SMARTSM001657.9E-5108146IPR015940Ubiquitin-associated domain
SuperFamilySSF1435031.31E-24331434IPR018997PUB domain
CDDcd104618.85E-61333438No hitNo description
PfamPF094091.4E-20346416IPR018997PUB domain
SMARTSM005808.0E-21349411IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLVCADCGK PCRSQTEVDL  60
HKKRTGHAEF TDKTMEAAKP IDLEAPPKPA SEAMDVDGSG KLVSPEVNKE MLGELESMGF  120
STARATRALH FSGNSTIEGA INWLSEHQED PDIDEMPMVP ANTVANKPSL TEEEKKIKAQ  180
ELRCFYKPFM NHGLVCPKHA LWGMIALVEK NCSFYSTAFE RERARKKKEE EEKRMERERE  240
KYYQQDNVYK LYYIVYVSII ELRRLEKEEE KRAREKIRQK LEEDKAERRR KLGLPAEAPA  300
ASKPSAPPPV EEKKSAFLPV RPATKAERMR DCLRNIKQQN KEEDAKVKRA FQTLLTYIGN  360
VVKNPDEEKF RKIRLTNATF QERVGSLGGI EFLELCGFEK PEGEEILFLA RDKVDKAVLN  420
VAGAELNSAI TNPFFGVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505120.0AK250512.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf74j13, mRNA sequence.
GenBankAK3600590.0AK360059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1109E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273725.10.0PREDICTED: UBX domain-containing protein 4
TrEMBLR7WD920.0R7WD92_AEGTA; UBX domain-containing protein 1-A
STRINGEMT200630.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517