PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT20012

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Nin-like

Protein Properties

Length: 958aa MW: 104340 Da PI: 6.1571

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20012	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.4	6.1e-28	582	633	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i +++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ EMT20012 582 AEKNIGMDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 633 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.59E-5	210	289	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	7.6E-4	239	298	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.54	567	653	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-25	585	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-23	851	939	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.3E-23	853	935	No hit	No description
SMART	SM00666	3.4E-18	856	938	IPR000270	PB1 domain
PROSITE profile	PS51745	22.582	856	938	IPR000270	PB1 domain
Pfam	PF00564	8.2E-16	857	937	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH 60 QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAENGTG RMAKSSGDLG 120 SDGDPEQGST SVVPRPIAGN LLAERMLMAL SLFRKSLGGG VLAQVWMPVE QEGHVVLSTC 180 EQPFLLDQAL AGYREVSRHF VFSAKEETCL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR 240 MEYALHHEVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF DAEMNNLRHA LQASCELGDS 300 KRLYRSEGAI LHFSEISAVH HGCWIQVYSA NQKATFTEIL DVLRAICHAH MLPLALTWVP 360 SSNGSDGGYV GHDNVLDSQS GKAILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR 420 ALKSNLPFFS PNIREYGIKD YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC 480 TGSEEQQMLL NNLSSTMQRI CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSGSSS 540 HGDQPATEEA FQDLSLIDKQ GDMSEQAQSS SMRLAEKKRS TAEKNIGMDV LRKYFSGSLK 600 DAAKSLGVCP TTLKRICRTH GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT 660 GSLVPAVSLP EKTSFPSCDA VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER DSCQLQRPDA 720 QKGEGDEFHM QTTNYSGSGD HGSYGPNVTH HIISEGTQGP LYPTGAVSAL HDKETGCIEP 780 LPCVLPSIKT TRDQIVGRNS PPMQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT 840 FKKNPARPLK DKSSPALTVK ATYNGDTVRF KFLPSMGWYH LLEEIAKRFK LSTGVFQLKY 900 KDDEDEWVIM ANDSDLQECV DVMDSMGTRN VKLQVRDLPC LISSSGSSCC LQLEGHNS

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MDVPLPSQSN RAGCNGSVGS PSDDPYGVTA MMNFDGYSEL CGSPSLADQL FSLLNDSSTH  60
QMFAMWSSLG SSPRASGVSE DMQLDAYSSV PGDQKVDLVS SVNPAENGTG RMAKSSGDLG  120
SDGDPEQGST SVVPRPIAGN LLAERMLMAL SLFRKSLGGG VLAQVWMPVE QEGHVVLSTC  180
EQPFLLDQAL AGYREVSRHF VFSAKEETCL QPGLPGRVFI SGVPEWTSNV LYYSKPEYLR  240
MEYALHHEVR GSLAMPIYDP SKGSCCAVLE LITKKEKPDF DAEMNNLRHA LQASCELGDS  300
KRLYRSEGAI LHFSEISAVH HGCWIQVYSA NQKATFTEIL DVLRAICHAH MLPLALTWVP  360
SSNGSDGGYV GHDNVLDSQS GKAILRIHES ACYVNDAKMQ GFFHACTETH LEKGQGIAGR  420
ALKSNLPFFS PNIREYGIKD YPLAHHARKF GLHAAVAIRL RSTYTGDDDY ILEFFLPINC  480
TGSEEQQMLL NNLSSTMQRI CKSLRTVSEA EVDKVDACTA VMYKATSGSC LPTGQSGSSS  540
HGDQPATEEA FQDLSLIDKQ GDMSEQAQSS SMRLAEKKRS TAEKNIGMDV LRKYFSGSLK  600
DAAKSLGVCP TTLKRICRTH GISRWPSRKI NKVNRSLKKI QTVINSVHGV DSSLQYDPAT  660
GSLVPAVSLP EKTSFPSCDA VSSPSVGKTV DEKSGPKSEQ GYSSPEGWER DSCQLQRPDA  720
QKGEGDEFHM QTTNYSGSGD HGSYGPNVTH HIISEGTQGP LYPTGAVSAL HDKETGCIEP  780
LPCVLPSIKT TRDQIVGRNS PPMQQADIDM FDDREGREHT HPSTSGMTDS SSGSASSHPT  840
FKKNPARPLK DKSSPALTVK ATYNGDTVRF KFLPSMGWYH LLEEIAKRFK LSTGVFQLKY  900
KDDEDEWVIM ANDSDLQECV DVMDSMGTRN VKLQVRDLPC LISSSGSSCC LQLEGHNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150529.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	R7WBQ7	0.0	R7WBQ7_AEGTA; Uncharacterized protein
STRING	EMT20012	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-179	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]