PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT19910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24823 Da PI: 4.6706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 47 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ + grWv+e+r+p ++g r +lg++ ae Aa+a++aa+++l g+ EMT19910 47 PVYRGVRRRGSAGRWVCEVRVPGKRG--ERLWLGTYAAAESAARAHDAAMLALLGH 100 68*******************95544..************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 47 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.758 | 48 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-17 | 48 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-26 | 48 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-16 | 48 | 113 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.29E-13 | 49 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MDTAIDSWIS SPSSSTSGHE HGEVVPVWSP AAKRPAGRTK FKETRHPVYR GVRRRGSAGR 60 WVCEVRVPGK RGERLWLGTY AAAESAARAH DAAMLALLGH SASAAACLNF PDSAWLLVMP 120 PWLSDLADIR RAAIEAVAVF LCLEAAAVVP VVDEATSPVY LLSPVDNADE VFQLPTFSAQ 180 GSDMFELDMS GEMDLDPYYA GFAQGMLLEP PPTPAYWENG DGGAAAGLWS Y |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF758494 | 0.0 | JF758494.1 Triticum aestivum clone 1179D19 genomic sequence. | |||
GenBank | JN987206 | 0.0 | JN987206.1 Triticum aestivum AP2 domain CBF protein (CBFIIId) mRNA, CBFIIId-24.1 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167754.1 | 1e-168 | dehydration-responsive element-binding protein 1H-like | ||||
Swissprot | A2Z389 | 3e-56 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | F5CPS6 | 1e-166 | F5CPS6_WHEAT; AP2 domain CBF protein | ||||
TrEMBL | N1R1L1 | 1e-166 | N1R1L1_AEGTA; Dehydration-responsive element-binding protein 1A | ||||
STRING | EMT19910 | 1e-167 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-24 | C-repeat/DRE binding factor 2 |