PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT19885

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HSF

Protein Properties

Length: 442aa MW: 48833.4 Da PI: 4.7156

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT19885	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.8	3.4e-33	39	129	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +ns+vv+d ++f++ +Lp++Fkhsnf+SFv+QLn+YgF+kv+ ++ weF+++ F +g+++ll++i+ EMT19885 39 FLTKTYDMVDDRSTDDVVSWSAGNNSLVVWDLHHFSTVLLPRHFKHSNFSSFVKQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNIR 126 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ EMT19885 127 RRR 129 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-55	35	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.4E-35	36	128	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.04E-32	36	128	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.0E-29	39	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-18	39	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-18	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-18	90	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MLSLVKEEEE DGDGTGDSPG ATAAPRPLEG LRGAKPSLFL TKTYDMVDDR STDDVVSWSA 60 GNNSLVVWDL HHFSTVLLPR HFKHSNFSSF VKQLNTYGFR KVDPDRWEFA NEGFLRGQRH 120 LLKNIRRRRP PANTAPNQQS LGSYLEVGHF GNHTDTDQLK RDKQLLMAEV AWRSGYGGQA 180 TIDGRSGEAK AGTAEHENAP ERHGGAATGG KQLLMAEVVK LRQEQQSMKT HLKGMEERLR 240 GTERKQQQMT AFLARVFRNP ELLKQLISLN GVRKELHDAM SKKRRRNIDQ GPEADDMGAS 300 GSLEQESPVL SDPYESVELL GEVSVELLAD GVPPELESSV ALLADGIPPD LEGAAELLVD 360 VIPSDLNDSG IDTDGVKPQD FGLGTCEVQQ NRAQGVLHDD FWEELMSRAL SEEDDSPVNL 420 DDMDALSEKM DFLVPNSPTR AT

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MLSLVKEEEE DGDGTGDSPG ATAAPRPLEG LRGAKPSLFL TKTYDMVDDR STDDVVSWSA  60
GNNSLVVWDL HHFSTVLLPR HFKHSNFSSF VKQLNTYGFR KVDPDRWEFA NEGFLRGQRH  120
LLKNIRRRRP PANTAPNQQS LGSYLEVGHF GNHTDTDQLK RDKQLLMAEV AWRSGYGGQA  180
TIDGRSGEAK AGTAEHENAP ERHGGAATGG KQLLMAEVVK LRQEQQSMKT HLKGMEERLR  240
GTERKQQQMT AFLARVFRNP ELLKQLISLN GVRKELHDAM SKKRRRNIDQ GPEADDMGAS  300
GSLEQESPVL SDPYESVELL GEVSVELLAD GVPPELESSV ALLADGIPPD LEGAAELLVD  360
VIPSDLNDSG IDTDGVKPQD FGLGTCEVQQ NRAQGVLHDD FWEELMSRAL SEEDDSPVNL  420
DDMDALSEKM DFLVPNSPTR AT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	39	128	29	129	Heat shock factor protein 1
5d5v_B	1e-21	39	128	29	129	Heat shock factor protein 1
5d5v_D	1e-21	39	128	29	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	128	RGQRHLLKNIRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187935.1	0.0	heat stress transcription factor A-2b-like
Swissprot	Q6VBB2	1e-150	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	R7WFG0	0.0	R7WFG0_AEGTA; Heat stress transcription factor A-2b
STRING	EMT19885	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	9e-77	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]