PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 790aa MW: 87459.1 Da PI: 5.6115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.6e-18 | 54 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ +++ vk++G+ W+tIa+ ++ gR +kqc++rw+++l EMT19784 54 KGPWSKEEDDVIIQMVKKYGPTKWSTIAQALP-GRIGKQCRERWHNHL 100 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 106 | 148 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ EMT19784 106 KDAWTQEEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 148 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 29 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.252 | 29 | 48 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 31.793 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-31 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-17 | 53 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.48E-15 | 56 | 100 | No hit | No description |
Pfam | PF13921 | 1.9E-18 | 57 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 65 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.671 | 105 | 155 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 105 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-12 | 108 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 109 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MTTSSAHEPA APTTKAAALH PDTPETIKAE CFPDRTDVQC LHRWQKVLNP ELVKGPWSKE 60 EDDVIIQMVK KYGPTKWSTI AQALPGRIGK QCRERWHNHL NPGINKDAWT QEEEIRLIQA 120 HHIYGNKWAE LSKFLPGRTD NAIKNHWHSS VKKKYESYRA EGLLAQFQGL PAVVYPTGSL 180 NVDSSSAMTQ QNSDGSGLNV NQEVQDSSEF SQSALANISS SQVEQVDEPV GCHGQIHSSD 240 GAHDSYSSCQ EACDTKANDA ASTSPETRHQ LSISENDPDI HWQQDLSVAD FDLQSELWQD 300 ISYQSLLTAP DSISADSFFS PNYPHSACSS EVANNFEEPL YPLHTYSSSR TGTVHHQSSA 360 TSVPPSFICS GRASQIVSSE LPIVPESKEQ QLTSVEESQP LESTTMGREG SPNHGKSVVG 420 QKQHSEALCY EPPCFPSLEV PFVSCELISS SDLPEYSPLG IRQLMRPSMS FSTPLRLWSS 480 PTCDRSRDDV LKSAAKSSVC TPSIMKKRQR EPPSPIPDVR LAKKMGTEKD CGSSAMPSTR 540 TERSCRDATR DDSLDLIPEN SKDIIYQGKT EDNANINTLE KGERCSTTER DTAYNLVSAG 600 ILTDRNGPNP ERRKLNTPTK SFSKDIISSR SKPTELLVEK SSVYINADYE YVNILADTPG 660 IKRGLESPSA WKSPLFTNFQ DGFFMSPTGT TFDALGLVKQ INEQNAPALE EAHELLESGS 720 LCNKESSDKE NIKHIVIKKE HATTNQISNV MSEARILDFN ECTTPVKKKE DNRCNTLGRS 780 PTSYVLKNVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-58 | 29 | 154 | 33 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-58 | 29 | 154 | 33 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951920 | 0.0 | JF951920.1 Triticum aestivum clone TaMYB35 R1R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174664.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | R7WG84 | 0.0 | R7WG84_AEGTA; Myb-related protein 3R-1 | ||||
STRING | EMT19784 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 5e-81 | myb domain protein 3r-4 |