PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 317aa    MW: 33967 Da    PI: 8.4735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19750genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l  +v+++G+  +W + +r++g++R++k+c++rw++yl
         EMT19750 14 KGPWAAEEDAVLRAYVAEHGTAgNWIALPRKIGLNRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP

2Myb_DNA-binding43.29e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l+  + +  G++ W+tIa+ ++ gRt++++k++w++
         EMT19750  69 GGFTDEEDRLICSLYASIGSR-WSTIAAQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.863966IPR017930Myb domain
SuperFamilySSF466893.31E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002499.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-231569IPR009057Homeodomain-like
CDDcd001673.08E-81662No hitNo description
SMARTSM007171.1E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.00467117IPR017930Myb domain
PfamPF002495.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2270114IPR009057Homeodomain-like
CDDcd001672.50E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWAAE EDAVLRAYVA EHGTAGNWIA LPRKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTDEEDRLIC SLYASIGSRW STIAAQLPGR TDNDVKNYWN TKLRGRRPGG  120
ARRSIRYALP LPQQPRLLLM SPTGGGAAST ALERMQLSVQ RRHVGIQDAP GLPFYGNLSP  180
AQQSVLSPAA GYSGVWSHIQ TSTNPGRVNV QDHQRAWGSS GGGGGPTPLV TSPAGETAVG  240
VGSSRSTPAA SSVTFDGDME DEIEMLLQQI GCLEEEDSRL LIGGEAGSAG SWSSCSTPGV  300
DSVFQDYVQG HGQQNYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141167107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632601e-114BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186746.10.0transcription factor MYB36-like
SwissprotQ9FKL24e-71MYB36_ARATH; Transcription factor MYB36
TrEMBLN1R0K20.0N1R0K2_AEGTA; Transcription factor RAX3
STRINGEMT197500.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-74myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]