PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 321aa    MW: 37254.7 Da    PI: 7.9283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19600genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.31.2e-921331375374
      GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
               ++ l a+++f   +P+++ s+  a qaIl+  +g++rvHi+Df+i++G+QWp ++q +a+R+eg+p+lRiTg++  ++     e++eetgerLa++A+ ++
  EMT19600  13 TDWLDAYNIFLASCPFVRTSYYFASQAILDDSKGQQRVHIVDFGIGYGFQWPLMIQRFAQREEGAPKLRITGIDVTHPCfhPCEMIEETGERLADYANMFK 113
               5668899******************************************************************9977768899****************** PP

      GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
               vp++++ +va+r++++++e+L+++++E+l++n+++++++l +e++ ++s+rdev+k++++++Pk+++    +  h+s+ F +rf e + +ys +fd+l+a+
  EMT19600 114 VPVQYQGIVASRWDTIKIEDLNIDEDEVLIINCIFRMKNLGHETAGINSARDEVMKTMRRMNPKIFISGTMNGLHSSPFFIQRFKEVMLHYSPMFDMLDAN 214
               ***************************************************************************************************** PP

      GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +pr++++r+++Er l+g ++ n++acega+r+er e++++W++r+ +aGF+++p++    k +++  + ++++ +   e++g+l++gWk+r L+++S W+
  EMT19600 215 VPRNNKARKMIERSLFGTDALNIIACEGADRTERPESYRQWQARFLKAGFQQLPVDPAFLKRVHMKNSLYHEE-FFAVEDRGWLLQGWKGRVLYAISKWK 313
               ***********************************************************************55.888899*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.9431294IPR005202Transcription factor GRAS
PfamPF035144.1E-9013313IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVHGRGRGV STTDWLDAYN IFLASCPFVR TSYYFASQAI LDDSKGQQRV HIVDFGIGYG  60
FQWPLMIQRF AQREEGAPKL RITGIDVTHP CFHPCEMIEE TGERLADYAN MFKVPVQYQG  120
IVASRWDTIK IEDLNIDEDE VLIINCIFRM KNLGHETAGI NSARDEVMKT MRRMNPKIFI  180
SGTMNGLHSS PFFIQRFKEV MLHYSPMFDM LDANVPRNNK ARKMIERSLF GTDALNIIAC  240
EGADRTERPE SYRQWQARFL KAGFQQLPVD PAFLKRVHMK NSLYHEEFFA VEDRGWLLQG  300
WKGRVLYAIS KWKPNETYDN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-311631496380Protein SCARECROW
5b3h_A1e-311631495379Protein SCARECROW
5b3h_D1e-311631495379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198294.10.0scarecrow-like protein 9
TrEMBLR7WF620.0R7WF62_AEGTA; Uncharacterized protein
STRINGEMT196000.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-109GRAS family protein