PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 321aa MW: 37254.7 Da PI: 7.9283 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 302.3 | 1.2e-92 | 13 | 313 | 75 | 374 |
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 ++ l a+++f +P+++ s+ a qaIl+ +g++rvHi+Df+i++G+QWp ++q +a+R+eg+p+lRiTg++ ++ e++eetgerLa++A+ ++ EMT19600 13 TDWLDAYNIFLASCPFVRTSYYFASQAILDDSKGQQRVHIVDFGIGYGFQWPLMIQRFAQREEGAPKLRITGIDVTHPCfhPCEMIEETGERLADYANMFK 113 5668899******************************************************************9977768899****************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 vp++++ +va+r++++++e+L+++++E+l++n+++++++l +e++ ++s+rdev+k++++++Pk+++ + h+s+ F +rf e + +ys +fd+l+a+ EMT19600 114 VPVQYQGIVASRWDTIKIEDLNIDEDEVLIINCIFRMKNLGHETAGINSARDEVMKTMRRMNPKIFISGTMNGLHSSPFFIQRFKEVMLHYSPMFDMLDAN 214 ***************************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +pr++++r+++Er l+g ++ n++acega+r+er e++++W++r+ +aGF+++p++ k +++ + ++++ + e++g+l++gWk+r L+++S W+ EMT19600 215 VPRNNKARKMIERSLFGTDALNIIACEGADRTERPESYRQWQARFLKAGFQQLPVDPAFLKRVHMKNSLYHEE-FFAVEDRGWLLQGWKGRVLYAISKWK 313 ***********************************************************************55.888899*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.943 | 1 | 294 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-90 | 13 | 313 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAVHGRGRGV STTDWLDAYN IFLASCPFVR TSYYFASQAI LDDSKGQQRV HIVDFGIGYG 60 FQWPLMIQRF AQREEGAPKL RITGIDVTHP CFHPCEMIEE TGERLADYAN MFKVPVQYQG 120 IVASRWDTIK IEDLNIDEDE VLIINCIFRM KNLGHETAGI NSARDEVMKT MRRMNPKIFI 180 SGTMNGLHSS PFFIQRFKEV MLHYSPMFDM LDANVPRNNK ARKMIERSLF GTDALNIIAC 240 EGADRTERPE SYRQWQARFL KAGFQQLPVD PAFLKRVHMK NSLYHEEFFA VEDRGWLLQG 300 WKGRVLYAIS KWKPNETYDN Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-31 | 16 | 314 | 96 | 380 | Protein SCARECROW |
5b3h_A | 1e-31 | 16 | 314 | 95 | 379 | Protein SCARECROW |
5b3h_D | 1e-31 | 16 | 314 | 95 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198294.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | R7WF62 | 0.0 | R7WF62_AEGTA; Uncharacterized protein | ||||
STRING | EMT19600 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-109 | GRAS family protein |