PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 940aa MW: 107212 Da PI: 7.1635 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.5 | 4.1e-109 | 338 | 710 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av++++ la++lL ++++++s dgd ++Rla+y++ +L+arla+s s++y++l ++ts ++ l a++lf+ ++P+++ s+ a qa EMT19598 338 LRTLLIHCAQAVAEDSYLLASELLLKIRQHSSADGDCTERLAFYLADGLEARLAGSRSQVYRTLIERRTS---PTDWLEAYSLFVAACPFVRTSYYFASQA 435 6789************************************************************999998...799999********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 Il+ +g++rvHiiDf+i++G+QWp ++q++a+++eg+p+lRiTg++ +++g e++eetg+rLa++A+ ++vpf+++ ++a r++++++e+L+++++E EMT19598 436 ILDVSKGQQRVHIIDFGIGYGFQWPLMIQKFAQQEEGAPKLRITGIDVSQPGfrPCEMIEETGKRLADYANMFKVPFQYQGIAAARWDTIKIEDLNIDEDE 536 ************************************************99999999**************************999**************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l++n+++++++l +e+ ++s+rdevLk++++++Pkv++ ++ h+s+ F +rf e + +ys++fd+l+a++p ++e+r+++Er +gr++ n++ace EMT19598 537 VLIINCIFRMKNLGHETDGINSARDEVLKTMRRMNPKVFISGTVNVLHSSPFFIQRFKEVMLHYSSVFDMLDANVPWDNEARKMLERIPFGRDALNIIACE 637 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aer++r e++++W++r +aGF+++p+++ + k++ ++ + ++ +++ e+ g+l++gWk+r ++++S W+ EMT19598 638 DAERTQRPESYRQWQARCLKAGFQQLPVDQAILKNIVHMKNLHYHEEFFSVEDCGWLLQGWKGRVMYAISKWK 710 ********************************************9999999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.886 | 312 | 690 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-106 | 338 | 710 | IPR005202 | Transcription factor GRAS |
Pfam | PF04827 | 7.9E-90 | 730 | 931 | IPR006912 | Harbinger transposase-derived protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 940 aa Download sequence Send to blast |
MATEPLRDNL DTVAATDQPY DGDSSSQQQL AVYNYDLRDP HSTVLSPANQ ESTCVLGGVT 60 SPGLCRVNSS LGQTQFQIAT GGSPEHRRIR SNDALHYISH MLMDDVDERV DICQGEAALQ 120 AAEKPFRDIL GEVYAPATNC PPMHSNNKPE NPDKSGTSSY KRLWSSSFSN NCSSYSVLQP 180 LTNLLSPYTC NRSLSLNSPS ISVGPTSRSS FPAFHCQRDV EEATMFAPRI GKLVIYLEND 240 ILSISKLTIK ETVGQRSENW DILEARSNKH LVFTTCAITR NENFDRVLLC YGRKTFDQTT 300 RLQETMAEKG NNNSVKGRSK GRQKLRARMQ PRKELVDLRT LLIHCAQAVA EDSYLLASEL 360 LLKIRQHSSA DGDCTERLAF YLADGLEARL AGSRSQVYRT LIERRTSPTD WLEAYSLFVA 420 ACPFVRTSYY FASQAILDVS KGQQRVHIID FGIGYGFQWP LMIQKFAQQE EGAPKLRITG 480 IDVSQPGFRP CEMIEETGKR LADYANMFKV PFQYQGIAAA RWDTIKIEDL NIDEDEVLII 540 NCIFRMKNLG HETDGINSAR DEVLKTMRRM NPKVFISGTV NVLHSSPFFI QRFKEVMLHY 600 SSVFDMLDAN VPWDNEARKM LERIPFGRDA LNIIACEDAE RTQRPESYRQ WQARCLKAGF 660 QQLPVDQAIL KNIVHMKNLH YHEEFFSVED CGWLLQGWKG RVMYAISKWK PDEKYDGQFA 720 KVIVRIFGPE YLRAPNEDDT KKLMSANERR GWPGMLGSID CMHWNWKNCH KAWQGMYFGK 780 SRDATIVLEA VASEDLWIWH CFFGMPGTLN DINVLQHSHL FARLASDDAP ACNYTINGHE 840 YTKEYYLADG IYPPWCTFVE SIKEPKTKKQ CEFARVQEAA RKDIERAFGV LQSRFAIVRG 900 PARFWDKKTL KNIITCFVIL HNMIVEDERG MDLELLRQCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-42 | 342 | 710 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP844898 | 0.0 | KP844898.1 UNVERIFIED: Triticum aestivum genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198291.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | R7WCD5 | 0.0 | R7WCD5_AEGTA; Uncharacterized protein | ||||
STRING | EMT19598 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-142 | GRAS family protein |