PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 940aa    MW: 107212 Da    PI: 7.1635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19598genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.54.1e-1093387101374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+av++++  la++lL ++++++s dgd ++Rla+y++ +L+arla+s s++y++l  ++ts    ++ l a++lf+ ++P+++ s+  a qa
  EMT19598 338 LRTLLIHCAQAVAEDSYLLASELLLKIRQHSSADGDCTERLAFYLADGLEARLAGSRSQVYRTLIERRTS---PTDWLEAYSLFVAACPFVRTSYYFASQA 435
               6789************************************************************999998...799999********************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               Il+  +g++rvHiiDf+i++G+QWp ++q++a+++eg+p+lRiTg++ +++g    e++eetg+rLa++A+ ++vpf+++ ++a r++++++e+L+++++E
  EMT19598 436 ILDVSKGQQRVHIIDFGIGYGFQWPLMIQKFAQQEEGAPKLRITGIDVSQPGfrPCEMIEETGKRLADYANMFKVPFQYQGIAAARWDTIKIEDLNIDEDE 536
               ************************************************99999999**************************999**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +l++n+++++++l +e+  ++s+rdevLk++++++Pkv++    ++ h+s+ F +rf e + +ys++fd+l+a++p ++e+r+++Er  +gr++ n++ace
  EMT19598 537 VLIINCIFRMKNLGHETDGINSARDEVLKTMRRMNPKVFISGTVNVLHSSPFFIQRFKEVMLHYSSVFDMLDANVPWDNEARKMLERIPFGRDALNIIACE 637
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aer++r e++++W++r  +aGF+++p+++ + k++ ++ + ++ +++   e+ g+l++gWk+r ++++S W+
  EMT19598 638 DAERTQRPESYRQWQARCLKAGFQQLPVDQAILKNIVHMKNLHYHEEFFSVEDCGWLLQGWKGRVMYAISKWK 710
               ********************************************9999999*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.886312690IPR005202Transcription factor GRAS
PfamPF035141.4E-106338710IPR005202Transcription factor GRAS
PfamPF048277.9E-90730931IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MATEPLRDNL DTVAATDQPY DGDSSSQQQL AVYNYDLRDP HSTVLSPANQ ESTCVLGGVT  60
SPGLCRVNSS LGQTQFQIAT GGSPEHRRIR SNDALHYISH MLMDDVDERV DICQGEAALQ  120
AAEKPFRDIL GEVYAPATNC PPMHSNNKPE NPDKSGTSSY KRLWSSSFSN NCSSYSVLQP  180
LTNLLSPYTC NRSLSLNSPS ISVGPTSRSS FPAFHCQRDV EEATMFAPRI GKLVIYLEND  240
ILSISKLTIK ETVGQRSENW DILEARSNKH LVFTTCAITR NENFDRVLLC YGRKTFDQTT  300
RLQETMAEKG NNNSVKGRSK GRQKLRARMQ PRKELVDLRT LLIHCAQAVA EDSYLLASEL  360
LLKIRQHSSA DGDCTERLAF YLADGLEARL AGSRSQVYRT LIERRTSPTD WLEAYSLFVA  420
ACPFVRTSYY FASQAILDVS KGQQRVHIID FGIGYGFQWP LMIQKFAQQE EGAPKLRITG  480
IDVSQPGFRP CEMIEETGKR LADYANMFKV PFQYQGIAAA RWDTIKIEDL NIDEDEVLII  540
NCIFRMKNLG HETDGINSAR DEVLKTMRRM NPKVFISGTV NVLHSSPFFI QRFKEVMLHY  600
SSVFDMLDAN VPWDNEARKM LERIPFGRDA LNIIACEDAE RTQRPESYRQ WQARCLKAGF  660
QQLPVDQAIL KNIVHMKNLH YHEEFFSVED CGWLLQGWKG RVMYAISKWK PDEKYDGQFA  720
KVIVRIFGPE YLRAPNEDDT KKLMSANERR GWPGMLGSID CMHWNWKNCH KAWQGMYFGK  780
SRDATIVLEA VASEDLWIWH CFFGMPGTLN DINVLQHSHL FARLASDDAP ACNYTINGHE  840
YTKEYYLADG IYPPWCTFVE SIKEPKTKKQ CEFARVQEAA RKDIERAFGV LQSRFAIVRG  900
PARFWDKKTL KNIITCFVIL HNMIVEDERG MDLELLRQCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-423427108375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8448980.0KP844898.1 UNVERIFIED: Triticum aestivum genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198291.10.0scarecrow-like protein 9
TrEMBLR7WCD50.0R7WCD5_AEGTA; Uncharacterized protein
STRINGEMT195980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-142GRAS family protein