PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT19597

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 725aa MW: 82146.1 Da PI: 6.9313

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT19597	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345.1	1.1e-105	345	717	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++ L++c +av+++++ la++lL+++++++s dgd qRla+y++ +L+arla+++ ++y+ l ++ts +++ l a++lf +P+ + s+ a qaI EMT19597 345 KTILINCSQAVAEDNHLLASKLLKKIRQHSSADGDCSQRLAFYLADGLEARLAGTGGQVYRNLMERRTS---TTDWLDAHSLFIASCPFDRTSYYFASQAI 442 678*********************************************************9999998...8999999****************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 l+ +g+ rvHi+Df+i+ G+QWp ++q++a+++eg+p+lRiTg++ p++g e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L+++++E+ EMT19597 443 LDVSQGKPRVHIVDFGIGFGFQWPLMIQKFAQQEEGAPKLRITGIDVPQPGfrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNIDEDEV 543 **********************************************99999****************************************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvace 301 l++n+++++++l +e+ +++s+rd+vLk++++++Pk+++ + ++s+ F +rf e + +ys++fd+l ++ +pr++++r+++Er+++g+++ nv+ace EMT19597 544 LIINCMFRMKNLGHETEAINSARDKVLKIMRTMNPKIFISGTVNGLRSSPFFIKRFKEVMFHYSSMFDMLdANVVPRDDKARKMIERMIFGKDALNVIACE 644 ******************************************************************555589999****************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 gaer+er e++++W++r eaGF+++p++ + + ++ +++ +++ e++g+l++gWk+r ++++S W+ EMT19597 645 GAERTERPESYRQWHARCLEAGFQQLPVDPAILGIIVYMKNTFWHEEFFAVEDRGWLLQGWKGRVIYAISKWK 717 ***************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.573	318	697	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-103	345	717	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MAVEPHLDDL DTAAANYQPY DRASSFQQQL TMDSYDLSGP LFLAQPTTTG ASTYLHAAVT 60 SPGLCKENSS LQTAAGGSPE HRRSRSNDAL HYISQMLMED ADERVEICQG EGALQAAEKQ 120 FRDLLGQVHP LSTNPPLLNS NNEPDSPDKG RTSCYKRLWS TSFSNDCPSY SMLQPFTTTL 180 SPYICNRSLS LQNRPFTSVG STSRSGFPSL HCQREVEEAT MFAPSIDKLV IYLENGILSI 240 SKLTTKAKVG ERSENTNFEV AHQNDWDILE GRSNKHLAFT SCAIIRNENF DQVLLCYGLE 300 SFKKTTRLRR GLAEEGNKNS LKGRSEGRQK LWQRKQPRTE LVDLKTILIN CSQAVAEDNH 360 LLASKLLKKI RQHSSADGDC SQRLAFYLAD GLEARLAGTG GQVYRNLMER RTSTTDWLDA 420 HSLFIASCPF DRTSYYFASQ AILDVSQGKP RVHIVDFGIG FGFQWPLMIQ KFAQQEEGAP 480 KLRITGIDVP QPGFRPCEMI EETGKRLADY ANMFKVPFQY QGIAASRWET IKIEDLNIDE 540 DEVLIINCMF RMKNLGHETE AINSARDKVL KIMRTMNPKI FISGTVNGLR SSPFFIKRFK 600 EVMFHYSSMF DMLDANVVPR DDKARKMIER MIFGKDALNV IACEGAERTE RPESYRQWHA 660 RCLEAGFQQL PVDPAILGII VYMKNTFWHE EFFAVEDRGW LLQGWKGRVI YAISKWKPDE 720 TYDGQ

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MAVEPHLDDL DTAAANYQPY DRASSFQQQL TMDSYDLSGP LFLAQPTTTG ASTYLHAAVT  60
SPGLCKENSS LQTAAGGSPE HRRSRSNDAL HYISQMLMED ADERVEICQG EGALQAAEKQ  120
FRDLLGQVHP LSTNPPLLNS NNEPDSPDKG RTSCYKRLWS TSFSNDCPSY SMLQPFTTTL  180
SPYICNRSLS LQNRPFTSVG STSRSGFPSL HCQREVEEAT MFAPSIDKLV IYLENGILSI  240
SKLTTKAKVG ERSENTNFEV AHQNDWDILE GRSNKHLAFT SCAIIRNENF DQVLLCYGLE  300
SFKKTTRLRR GLAEEGNKNS LKGRSEGRQK LWQRKQPRTE LVDLKTILIN CSQAVAEDNH  360
LLASKLLKKI RQHSSADGDC SQRLAFYLAD GLEARLAGTG GQVYRNLMER RTSTTDWLDA  420
HSLFIASCPF DRTSYYFASQ AILDVSQGKP RVHIVDFGIG FGFQWPLMIQ KFAQQEEGAP  480
KLRITGIDVP QPGFRPCEMI EETGKRLADY ANMFKVPFQY QGIAASRWET IKIEDLNIDE  540
DEVLIINCMF RMKNLGHETE AINSARDKVL KIMRTMNPKI FISGTVNGLR SSPFFIKRFK  600
EVMFHYSSMF DMLDANVVPR DDKARKMIER MIFGKDALNV IACEGAERTE RPESYRQWHA  660
RCLEAGFQQL PVDPAILGII VYMKNTFWHE EFFAVEDRGW LLQGWKGRVI YAISKWKPDE  720
TYDGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-44	348	717	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171028.1	0.0	scarecrow-like protein 34
TrEMBL	R7WAW8	0.0	R7WAW8_AEGTA; Uncharacterized protein
STRING	EMT19597	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-152	GRAS family protein