PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 719aa MW: 81407.6 Da PI: 7.7935 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 354.1 | 2.1e-108 | 340 | 711 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av+++d+ a++lL+++++++s dgd +qRla+y++ +Laarla+ +s++y+ l ++ts +++ l a + f+ +P+ + sh a qa EMT19595 340 LRTLLVNCAQAVAEHDHLVASELLKKIRQHSSADGDCTQRLAFYMADGLAARLAGIGSQVYRNLMERRTS---TTDWLDACSHFHASCPFDRTSHYFASQA 437 6789************************************************************999998...7889999999****************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 Il+ +g+ rvHi+Df+i+ GlQWp ++q +++++eg+p+lRiTg++ p++g e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L+++++E EMT19595 438 ILDVSQGQPRVHIVDFGIGFGLQWPLMIQRFSQQEEGAPKLRITGIDVPQPGlhPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNIDEDE 538 ***************************************************99999********************************************* PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l++n+++++++l +e+ +++s rd+vLk++++++Pk++++ + s+ F +rf e + +ys++fd+l+a++ +++++r+ +E+ l+g+++ n++ace EMT19595 539 VLIINCMFRMKNLGHETEAVNS-RDRVLKTMRRMNPKILILGTVNGLSCSPFFIQRFKEVMFHYSSMFDMLDANIRQDNKARKLIEKILFGQDALNIIACE 638 **************99999999.****************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 gaer+er e++++W++r +aGF+++p++ + k + + + + +++ v e++g+l++gWk+r L+++S W+ EMT19595 639 GAERTERPESYRQWQARCLKAGFQQLPVDPAMLKIILQMKNLRSHEEFFVVEDRGWLLQGWKGRVLYAISKWK 711 *****************************999888888888888899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.107 | 314 | 691 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-106 | 340 | 711 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MAIEPLLADL DSASSSQQQL TVDSYDLSSP LFLAQPTTTG ASTYLHAAAT SPGLCNFNSS 60 LVQNQFQIAA RGSPEHRQIR SNDALHYISQ MLMEDVDETP VGVCQEEAAL QAAEKPFRDI 120 LGPVYPPATN WPSLHSNNET GNSHNSWTSR YKRLWSASFC NDYSSYSMLQ PLTNPLSPCT 180 CNRSLSLQKR PFISVGPTSR SGFPALHRQR GVEEATVAAP SIDKLVIYLE NGILSITKLT 240 TNAKVGERSE NAIFEVADPS DWDILEGRSN KHLAFTTCAI IRNENFDRIL LCYGRKSFEQ 300 ITRSQRGMAE EGSKSSMKGR SKGRQKLWQR KQPRRELVDL RTLLVNCAQA VAEHDHLVAS 360 ELLKKIRQHS SADGDCTQRL AFYMADGLAA RLAGIGSQVY RNLMERRTST TDWLDACSHF 420 HASCPFDRTS HYFASQAILD VSQGQPRVHI VDFGIGFGLQ WPLMIQRFSQ QEEGAPKLRI 480 TGIDVPQPGL HPCEMIEETG KRLADYANMF KVPFQYQGIA ASRWETIKIE DLNIDEDEVL 540 IINCMFRMKN LGHETEAVNS RDRVLKTMRR MNPKILILGT VNGLSCSPFF IQRFKEVMFH 600 YSSMFDMLDA NIRQDNKARK LIEKILFGQD ALNIIACEGA ERTERPESYR QWQARCLKAG 660 FQQLPVDPAM LKIILQMKNL RSHEEFFVVE DRGWLLQGWK GRVLYAISKW KPNETYDDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-49 | 344 | 711 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171028.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | R7WF60 | 0.0 | R7WF60_AEGTA; Uncharacterized protein | ||||
STRING | EMT19595 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-138 | GRAS family protein |