PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31915.9 Da PI: 4.6998 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ +aeeAa+a++ +++++g EMT19548 45 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDVEARRIRG 94 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.907 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 45 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.48E-32 | 45 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 46 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-11 | 46 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MPHLYLFKIN RLIFISLLHS DGLKATAAGD DDCASGSAKR KRKNQFRGIR RRPWGKWAAE 60 IRDPRKGVRV WLGTYNSAEE AARAYDVEAR RIRGKKAKVN FPEEAPMAPQ QRCATAVKVP 120 EFNTEQKPAL NTMGNADVYS CPAVDYTLNQ QFVQPQNMSF VPTVNAVEAP FMNFSSDQGS 180 NSFSCSDFSW ENDIKTPDIT SVLASIPTST EVNESAFLQN NGINSTVPPV MGDANVDLAD 240 LEPYMKFLMD DGSDESIDSI LSCDVPQDVV GNMGLWTFDD MPLSAGFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 44 | 108 | 13 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 52 | KRKRKNQFRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF542184 | 0.0 | AF542184.1 Triticum aestivum EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183034.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-108 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A453R045 | 0.0 | A0A453R045_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1R142 | 0.0 | N1R142_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT19548 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-34 | ERF family protein |