PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19464
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 349aa    MW: 38682.5 Da    PI: 9.2224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19464genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.6e-074465223
              EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
              +C+ C+k+Fs +++L++H+r H
  EMT19464 44 QCQLCSKVFSARDSLRKHMREH 65
              7*******************99 PP
2zf-C2H215.54.8e-05263285123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C+ CgksF + s L  H+r H
  EMT19464 263 HQCNACGKSFGSGSALGGHMRWH 285
               79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.2194370IPR007087Zinc finger, C2H2
SMARTSM003557.5E-44365IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-44467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.25E-114465No hitNo description
PfamPF139126.4E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-11258285No hitNo description
Gene3DG3DSA:3.30.160.605.0E-6261285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.7E-8262286IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803263290IPR007087Zinc finger, C2H2
SMARTSM003551.9263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSLHWHKVKQ PKGTPSPPAT VVDLNVSLLS PSDEETLLRF SGTQCQLCSK VFSARDSLRK  60
HMREHREKNV LSKPVEEAAG LALAIAGGSC NVLLSPVKHK RSKRGAPPLK FNEMDAAASL  120
LLLSEHFSKV RSTEFKKPKG CKCSAYDICY GQCVKDNNLI PNFAKEKTSI PNIAKHSACE  180
DCFGQCEKDS SLIPNVDKKE RSLIANVPKK YNTLISIVLE EVDLNVLDHV LAGDAELRKK  240
QRTDNSVEMK CADFSAAVKV KRHQCNACGK SFGSGSALGG HMRWHLPRSN DRRHGFVESP  300
DSVVMKEQKQ KLELDTKFLD LRLPGLTDIT IFSGLKSEPE PWRVASSVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.10.0uncharacterized protein LOC109750291
TrEMBLR7WFX50.0R7WFX5_AEGTA; Uncharacterized protein
STRINGEMT194640.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229