PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 159aa MW: 17393.3 Da PI: 5.1851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ l d+ +++G+ +W t +++ g++R++k+c++rw++yl EMT19124 14 RGPWSPEEDDALRDYMQRHGNTgSWITLPNKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28 | 5.1e-09 | 69 | 104 | 2 | 39 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 g +T eEd +++ + qlG++ W++Ia+ + +Rt+++ EMT19124 69 GGFTDEEDTIIYSLYSQLGSK-WSLIASQLE-RRTDND 104 569******************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.074 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-23 | 13 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.32E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 7.201 | 63 | 104 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.8 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-7 | 69 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 70 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-5 | 71 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MGRAPCCDRA AVTRGPWSPE EDDALRDYMQ RHGNTGSWIT LPNKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDTIIY SLYSQLGSKW SLIASQLERR TDNDGSTSAS AASSGSNWSA 120 VDNAGGFFVD FCAAGPDLAA ADQFLGGFYY PLDPTLSLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-18 | 12 | 103 | 5 | 94 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951908 | 1e-165 | JF951908.1 Triticum aestivum clone TaMYB25 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171470.1 | 3e-71 | transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 9e-54 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | R7WFM2 | 1e-114 | R7WFM2_AEGTA; Uncharacterized protein | ||||
STRING | EMT19124 | 1e-114 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-52 | MYB family protein |
Publications ? help Back to Top | |||
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