PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 159aa    MW: 17393.3 Da    PI: 5.1851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19124genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+ l d+ +++G+  +W t +++ g++R++k+c++rw++yl
         EMT19124 14 RGPWSPEEDDALRDYMQRHGNTgSWITLPNKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding285.1e-0969104239
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      g +T eEd +++ +  qlG++ W++Ia+ +  +Rt+++
         EMT19124  69 GGFTDEEDTIIYSLYSQLGSK-WSLIASQLE-RRTDND 104
                      569******************.*********.****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.074966IPR017930Myb domain
SuperFamilySSF466896.68E-2313104IPR009057Homeodomain-like
SMARTSM007178.1E-91364IPR001005SANT/Myb domain
PfamPF002499.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-231569IPR009057Homeodomain-like
CDDcd001673.32E-81662No hitNo description
PROSITE profilePS500907.20163104IPR017877Myb-like domain
SMARTSM007174.867115IPR001005SANT/Myb domain
PfamPF002493.4E-769104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-1470104IPR009057Homeodomain-like
CDDcd001671.96E-571104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRAPCCDRA AVTRGPWSPE EDDALRDYMQ RHGNTGSWIT LPNKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDTIIY SLYSQLGSKW SLIASQLERR TDNDGSTSAS AASSGSNWSA  120
VDNAGGFFVD FCAAGPDLAA ADQFLGGFYY PLDPTLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1812103594B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519081e-165JF951908.1 Triticum aestivum clone TaMYB25 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171470.13e-71transcription factor RAX2-like
SwissprotQ9SJL79e-54RAX2_ARATH; Transcription factor RAX2
TrEMBLR7WFM21e-114R7WFM2_AEGTA; Uncharacterized protein
STRINGEMT191241e-114(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-52MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]