PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19081
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MIKC_MADS
Protein Properties Length: 301aa    MW: 34583.4 Da    PI: 7.9241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19081genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-24959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              +rie+++ rqvtf kR+ g++KKA EL vLCda+v +++fs+tg+lyeys+
  EMT19081  9 ERIEDTTSRQVTFFKRKGGLFKKARELGVLCDAQVGILLFSNTGRLYEYSN 59
              69***********************************************95 PP
2K-box76.66.8e-261382261098
     K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
               + + ++ ++ e+++L+++++nLq+ +R+llG++L  L l+ L+ Le+qLe+s+ +iR +K++l++++ieel kke  +++en++L kkl
  EMT19081 138 ARRLTQLWKVEANRLRQQLHNLQEDHRQLLGQNLPGLGLEGLKDLENQLETSIHNIRLTKDQLMIDEIEELNKKESLVHQENTELYKKL 226
               5566899*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.165161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-27383IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-23323IPR002100Transcription factor, MADS-box
CDDcd002652.55E-33379No hitNo description
PfamPF003192.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.44142232IPR002487Transcription factor, K-box
PfamPF014862.0E-24143226IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVRRKTVIER IEDTTSRQVT FFKRKGGLFK KARELGVLCD AQVGILLFSN TGRLYEYSNS  60
TSGVNSIIER YQKVKEGQQF MSASAEAKML WMRAGEWEQA IMHDGVRSSN EATGTMKIDE  120
VAMCGECSRV KNRDALVARR LTQLWKVEAN RLRQQLHNLQ EDHRQLLGQN LPGLGLEGLK  180
DLENQLETSI HNIRLTKDQL MIDEIEELNK KESLVHQENT ELYKKLNIIR RQNLDLQNKL  240
NGQVEVNETI TSSSSQYNIA ARADPVCLQV SHPHHAERDE QPESPTLWYG KVYIFSNLLC  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-13179177MEF2C
5f28_B1e-13179177MEF2C
5f28_C1e-13179177MEF2C
5f28_D1e-13179177MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165069.11e-156MADS-box transcription factor 23-like
TrEMBLR7WA880.0R7WA88_AEGTA; MADS-box transcription factor 27
STRINGEMT190810.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-46AGAMOUS-like 16