PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 389aa MW: 42615.6 Da PI: 4.5854 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5e-17 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdps+ r++lg+f +ae Aa+a++ + +++g EMT18835 115 KFRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEAAARAYDVEAHRIYG 164 89*******.**********965...4*******************99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.33E-30 | 115 | 173 | No hit | No description |
PROSITE profile | PS51032 | 23.09 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-35 | 115 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 115 | 173 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 115 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-10 | 115 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MYGGVSLADL EVPMVTRKVT EARLWHNKKN PRLGGSGDMR FTGLGGRRGL GLDDNKEDFE 60 ADFEEFEADS RDSDLDLGLS GVDEKDDDEE VIEIKPVAAI KNRSLFQAKI KRKNKFRGIR 120 QRPWGKWAAE IRDPSKGVRV WLGTFNSAEA AARAYDVEAH RIYGNKANVN FPEEPIVPQK 180 RRTRRAAPKA PKLSASREPT AIPVVNNLAN PKAFVYPSAD FASNQSLALH ENLSFVPAMN 240 SDAPVEASVM NLHSNQGSNS FGYSEMGWNY DTKTPDISST APISTIADGV ESALVQSNPY 300 NSVVTAEGAE SAALVQSNTY NSVVPPAMEN NDVDIVALVR LLMDDGVVEP IDSLLNFDVP 360 QDVVGNMDIW SSDDMPMCGE FFEGSKPCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 116 | 172 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-18 | 116 | 172 | 6 | 63 | ATERF1 |
3gcc_A | 1e-18 | 116 | 172 | 6 | 63 | ATERF1 |
5wx9_A | 6e-18 | 114 | 174 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 184 | QKRRTRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157944.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-100 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A453N646 | 0.0 | A0A453N646_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7WEF7 | 0.0 | R7WEF7_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT18835 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 7e-25 | related to AP2 2 |