PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28707 Da PI: 6.0574 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5e-14 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv v++lG ++W+ a+ g++Rt+k+c++rw +yl EMT18692 5 KGPWTENEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 52 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l++ +++++G++ W++Iar+++ gRt++++k++w++++ EMT18692 58 RGRITADEERLILSLHAEWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 103 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.945 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-27 | 3 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.30E-7 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 24.823 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 58 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 60 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.87E-10 | 62 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAARKGPWTE NEDAQLVWFV RLLGERRWDF LAQVSGLRRT GKSCRLRWVN YLHPGLKRGR 60 ITADEERLIL SLHAEWGSRW SRIARKLPGR TDNEIKNYWR THMRKKAQEE KMLAKKKASS 120 SPSSSSSSTT SLTCSASPTA TSSSAATTEA PQESTTTSMD DEAEQEATTS ASEEKKAEVV 180 QYCSAVDMDQ LWNDIAASES YPEMMMSWGA AGHVAMPAPA VEPSSPVWEF CEDYSLWRID 240 DQEYYNKIDQ HALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-25 | 5 | 107 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-25 | 5 | 107 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-25 | 5 | 107 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951904 | 0.0 | JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156198.1 | 0.0 | myb-related protein MYBAS2-like | ||||
TrEMBL | A0A3B5ZQ24 | 0.0 | A0A3B5ZQ24_WHEAT; Uncharacterized protein | ||||
TrEMBL | R7W975 | 0.0 | R7W975_AEGTA; Myb-related protein MYBAS2 | ||||
STRING | EMT18692 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-62 | myb domain protein 59 |