PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18692
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 254aa    MW: 28707 Da    PI: 6.0574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18692genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-14552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv  v++lG ++W+  a+  g++Rt+k+c++rw +yl
         EMT18692  5 KGPWTENEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 52
                     79********************************************97 PP

2Myb_DNA-binding52.21.4e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l++ +++++G++ W++Iar+++ gRt++++k++w++++
         EMT18692  58 RGRITADEERLILSLHAEWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 103
                      899*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.945152IPR017930Myb domain
SuperFamilySSF466894.59E-27399IPR009057Homeodomain-like
SMARTSM007171.2E-10454IPR001005SANT/Myb domain
PfamPF002492.1E-12552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-19659IPR009057Homeodomain-like
CDDcd001674.30E-7752No hitNo description
PROSITE profilePS5129424.82353107IPR017930Myb domain
SMARTSM007171.7E-1557105IPR001005SANT/Myb domain
PfamPF002491.9E-1458102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2360106IPR009057Homeodomain-like
CDDcd001674.87E-1062103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAARKGPWTE NEDAQLVWFV RLLGERRWDF LAQVSGLRRT GKSCRLRWVN YLHPGLKRGR  60
ITADEERLIL SLHAEWGSRW SRIARKLPGR TDNEIKNYWR THMRKKAQEE KMLAKKKASS  120
SPSSSSSSTT SLTCSASPTA TSSSAATTEA PQESTTTSMD DEAEQEATTS ASEEKKAEVV  180
QYCSAVDMDQ LWNDIAASES YPEMMMSWGA AGHVAMPAPA VEPSSPVWEF CEDYSLWRID  240
DQEYYNKIDQ HALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2551074105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-2551074105C-Myb DNA-Binding Domain
1msf_C5e-2551074105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519040.0JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156198.10.0myb-related protein MYBAS2-like
TrEMBLA0A3B5ZQ240.0A0A3B5ZQ24_WHEAT; Uncharacterized protein
TrEMBLR7W9750.0R7W975_AEGTA; Myb-related protein MYBAS2
STRINGEMT186920.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.34e-62myb domain protein 59