PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18587

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 531aa MW: 60482.2 Da PI: 7.4641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18587	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	311.8	1.6e-95	162	520	15	373
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115 ++ e+ ++++ + ++++ ++ ++qRla+yf+e+L+arla+ +s+ly+al +++t+ ++e+l+a+klf ++ ++k+++l N++I++av g +++Hi+ EMT18587 162 EESEMLDQFMLNSYDMCTTEAHATQRLAHYFAEGLEARLAGRGSQLYRALMVKRTP---VVEVLKAYKLFMSACCFMKVCFLFSNKTIYNAVMGRHKLHIV 259 55667777888888899999*********************************9...************************************** PP GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214 ++++ G+QWp Ll+ La+R++gpp++RiT + s ++g +e+++ tg+rL++ A+++gvpfef+v +a + ed+++e+L+++p+E+l+Vn+ ++ +l+ EMT18587 260 HYGVNDGFQWPDLLRWLAEREGGPPKVRITSITSLRPGfrPAEQTHDTGQRLRRCAKQFGVPFEFRV-IAAKAEDVRVEDLNINPDEVLVVNSLIHFRSLM 359 ******************************999999**********************9.7999************************* PP GRAS 215 desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 desv ++ +rd vL+++++++P v+v++ +a++n++ F++rf + l+ ++a fd++ea++pr+++er vEr +++r ++n++aceg++r+er ++++ EMT18587 360 DESVVIDRlnPRDMVLNTIRKMKPAVFVHAIVNASYNTTFFVTRFRQVLHNFAAHFDMMEATVPRDNDERLLVERDIIARCAMNIIACEGTDRVERPQNYR 460 9998889************************************************************************************** PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +W++r ++aG+++++l+ ++++ k +++k + + ++++e++++l++gWk+r L ++S W EMT18587 461 EWQARNQRAGLRQLELDLDIVQFLKKVVKKQYHKHFMINEDHQWLLQGWKGRVLHAISTW 520 ****************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.408	122	501	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-93	162	520	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MAPTPYVFPN LQPAPALQQP HDDLALDYIS RMLMEEDIVD KFIYQYPDPA ALLQAQHPFA 60 QILTTSDTTT SSDMLTSALS SRNIQNPAFF LNGKGTAEPN NSMDVISSMA FFRGMEEANR 120 FLPRCSGAVE GSYMPHGGGG NGAEAGRSSK QMAVQVHPES KEESEMLDQF MLNSYDMCTT 180 EAHATQRLAH YFAEGLEARL AGRGSQLYRA LMVKRTPVVE VLKAYKLFMS ACCFMKVCFL 240 FSNKTIYNAV MGRHKLHIVH YGVNDGFQWP DLLRWLAERE GGPPKVRITS ITSLRPGFRP 300 AEQTHDTGQR LRRCAKQFGV PFEFRVIAAK AEDVRVEDLN INPDEVLVVN SLIHFRSLMD 360 ESVVIDRLNP RDMVLNTIRK MKPAVFVHAI VNASYNTTFF VTRFRQVLHN FAAHFDMMEA 420 TVPRDNDERL LVERDIIARC AMNIIACEGT DRVERPQNYR EWQARNQRAG LRQLELDLDI 480 VQFLKKVVKK QYHKHFMINE DHQWLLQGWK GRVLHAISTW VSDDASSTQV T

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MAPTPYVFPN LQPAPALQQP HDDLALDYIS RMLMEEDIVD KFIYQYPDPA ALLQAQHPFA  60
QILTTSDTTT SSDMLTSALS SRNIQNPAFF LNGKGTAEPN NSMDVISSMA FFRGMEEANR  120
FLPRCSGAVE GSYMPHGGGG NGAEAGRSSK QMAVQVHPES KEESEMLDQF MLNSYDMCTT  180
EAHATQRLAH YFAEGLEARL AGRGSQLYRA LMVKRTPVVE VLKAYKLFMS ACCFMKVCFL  240
FSNKTIYNAV MGRHKLHIVH YGVNDGFQWP DLLRWLAERE GGPPKVRITS ITSLRPGFRP  300
AEQTHDTGQR LRRCAKQFGV PFEFRVIAAK AEDVRVEDLN INPDEVLVVN SLIHFRSLMD  360
ESVVIDRLNP RDMVLNTIRK MKPAVFVHAI VNASYNTTFF VTRFRQVLHN FAAHFDMMEA  420
TVPRDNDERL LVERDIIARC AMNIIACEGT DRVERPQNYR EWQARNQRAG LRQLELDLDI  480
VQFLKKVVKK QYHKHFMINE DHQWLLQGWK GRVLHAISTW VSDDASSTQV T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-39	178	520	33	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575610.4	0.0	scarecrow-like protein 33
TrEMBL	R7W8Z9	0.0	R7W8Z9_AEGTA; Uncharacterized protein
STRING	EMT18587	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-112	SCARECROW-like 14