PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18532
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-PHD
Protein Properties Length: 570aa    MW: 63324.8 Da    PI: 4.2243
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18532genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.66.8e-064364671344
               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
  Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqV 44 
               ++L e F+ ++yps+  +e LA++lgLt  qV
  EMT18532 436 QRLHEQFKIHQYPSRVVKESLAQELGLTFHQV 467
               6899************************9998 PP
2PHD31.73.6e-112086150
              SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..............TBSSHHHHT CS
       PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..............ewlCeeCke 50
              +C+ C+   ++ +++++lCdg Ck+ fH++Cl+++l +++                  +w C+ C++
  EMT18532 20 ICATCSLkeDTLDNDIILCDGaCKRGFHQNCLNPPLLTKDSNTYfpisyaiqvpegeeKWHCPACDC 86
              699999864555********66**************977776669********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.09E-101590IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.7E-111685IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.4241887IPR019787Zinc finger, PHD-finger
PfamPF006283.4E-82086IPR019787Zinc finger, PHD-finger
SMARTSM002495.3E-92085IPR001965Zinc finger, PHD-type
PROSITE patternPS0135902184IPR019786Zinc finger, PHD-type, conserved site
CDDcd155041.40E-182184No hitNo description
SuperFamilySSF466898.98E-6423467IPR009057Homeodomain-like
CDDcd000864.99E-6427467No hitNo description
Gene3DG3DSA:1.10.10.604.8E-6436467IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAHEHAFFFG VTLMVNNTII CATCSLKEDT LDNDIILCDG ACKRGFHQNC LNPPLLTKDS  60
NTYFPISYAI QVPEGEEKWH CPACDCRIDC IESINKFQGT SDLSISDSWQ KVFPEAAAMA  120
HGPMQSDVPD LPSDDSEDDD FDPNISEEHV ACDVEGSSEE DGDEGSYSDD SNFITSSDNL  180
EHVKDGEKVD DLGLPSDDSE DDDYDPAGPD SDEDIKEKQD ESDFTSDSDD FCADIAKSCH  240
MEEVSSGRKA GDHTNDLEGA PVGPNTSISH LTTKDLEIDQ DAILPSRRRQ VKPLDYKKLY  300
DDAYGEAPSD SSDGEDWSGK STLKEDSEEE NEVDSFVHKS SRGTRAVHRG LVNDQHSRRL  360
TSGPEVDQAA DGKAPPGSSY REDLSQKCTP ETEFTPQSPQ QSLNCSVNWQ NTEELLTPNG  420
SSTTGQKRHY GPIINQRLHE QFKIHQYPSR VVKESLAQEL GLTFHQVIPT WCYGKDEGWS  480
SLVDRWLEEK LKKPLSGMKL SKLAHAQSNR KDVESEYYGN TEENLESYKE SFQRPHPGPD  540
AGDPVLSQLD DTAVVAIQPK FHGRYLSSMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686280.0AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171709.10.0homeobox protein HOX1A-like
TrEMBLR7W8V20.0R7W8V2_AEGTA; Homeobox protein HOX1A
STRINGEMT185320.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-26Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain