PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT18510

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HB-other

Protein Properties

Length: 1349aa MW: 149409 Da PI: 7.2169

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18510	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43	7.9e-14	178	229	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+ + + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ EMT18510 178 KKSPLQIQMLESSYSEVQYPKPEDLTEYAASVGLTYNQVRIWFKERRRKERR 229 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.447	170	230	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-13	172	236	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-14	172	234	IPR001356	Homeobox domain
CDD	cd00086	1.50E-8	177	220	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-14	177	237	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-11	178	229	IPR001356	Homeobox domain
Pfam	PF15612	1.3E-5	852	883	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-9	975	1046	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1349 aa Download sequence Send to blast
MTALARIHGE KRALTTLDDS SDSGTQLRAT TANTAGTSRP TTIINAGLVH DTCTCATKKT 60 QPVNSFCNIH TPRGAKRKTG RDRLLYLGLA VEGDGGAVAE GHGGVAGRRV GPDPEAAAGD 120 PGLEGEEGAE PVLCLDAAHV EAVAARAPQA RSEDLGRAGA PPMMAKGFLA KSDNAGTKKS 180 PLQIQMLESS YSEVQYPKPE DLTEYAASVG LTYNQVRIWF KERRRKERRH MEAAEVHVET 240 QASARSNWPR CSSSRSSNSS QSPMQGIAGL QPEDDITLGR SMSLVGEKHT LRSQVLFPKD 300 YILRKVFRKD GPSLGGDPDL LPERAHVHVR GLSLVALKMR LIPSQYHVEL IDAVFNSCRY 360 HRTSFLPGSK RFEEEKVPIF LPARSFFLVV ERLAIFLSAG WMFFVWGRAG LGGNSGVEPI 420 MSPTAQRSTL PFENNDPVRK HGKGKEIQDC SSFIDESGCL RSLRPFEDFG GKLAQKQTVP 480 RKKVNKKSRP PPSKRKVPCG RVTDLKEHPP VECHLSVDES ESSELRTEQA TLVDDEELEL 540 SELQAGPNPL RCSAHISSTG RHGCPLCKDL LARFPPPSVR MKQPFPTKPW ESSLEMVKKL 600 FQVVRFVYTH FGSMDVHPFT FDEFAQAFHD KSTLDIKLMI SLKNKMGLQG LINGSVREQE 660 FDVNFWIKSL NSLTWVEILR QVLVASGFGS DHHMLNRNFF NKEKNQMVKY GLRPRTLKGE 720 LFTLLSKKGS GGLKVAELAK SPQIIGLNLS GASEVEQLIF STLSSDITLF EKIAPSAYRL 780 RVDPRIKGKE DPRSDTEDSG TVDDDGDASS SGDESDGPQE SYPEHESRIV RWRQKNVHKN 840 MNKCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL IDVVSGAGSV PRLEEPQSVL 900 SNIQRAQSHA SGGKIKKCTR TIYQSSDEYL NRPGSSHSFD SSMQGQSGTL RSQDYIADSG 960 ANESPTGFAH QPQIVLLGSD RRYNNYWLFL GPCRADDPGH RRVYFESSED GHWEVIDSPQ 1020 DLLSLLSVLD IRGTREAYLL ASMKKRQSCL FEGMKKHLED GCVVALTASS DSSHSETSSG 1080 NRYSPKPSSG DGASPLSDID SASVPTYLAG NLQNASSAIG IEVGRRSDEK MLKWERLQAL 1140 DKWIWTSFYS SLTAVKCGKR SFKESLVHCE SCHDLYWRDE KHCRICHSTF EVGFDLEERY 1200 AIHVATCREP EDLYDVPNHK VLPSQLQALK AAIHAIEARM PTAAFAGLWM KSSHNLWVKR 1260 LRRTSSLPEL LQVLVDFVGA IDEDWLYQSS SAVSFSSYLD DITVYFQTMP QTTSAVALWV 1320 VKLDALIAPD LAQADSCRGL GKGSIQTRA

Sequence ? help Back to Top

Protein Sequence Length: 1349 aa Download sequence Send to blast

MTALARIHGE KRALTTLDDS SDSGTQLRAT TANTAGTSRP TTIINAGLVH DTCTCATKKT  60
QPVNSFCNIH TPRGAKRKTG RDRLLYLGLA VEGDGGAVAE GHGGVAGRRV GPDPEAAAGD  120
PGLEGEEGAE PVLCLDAAHV EAVAARAPQA RSEDLGRAGA PPMMAKGFLA KSDNAGTKKS  180
PLQIQMLESS YSEVQYPKPE DLTEYAASVG LTYNQVRIWF KERRRKERRH MEAAEVHVET  240
QASARSNWPR CSSSRSSNSS QSPMQGIAGL QPEDDITLGR SMSLVGEKHT LRSQVLFPKD  300
YILRKVFRKD GPSLGGDPDL LPERAHVHVR GLSLVALKMR LIPSQYHVEL IDAVFNSCRY  360
HRTSFLPGSK RFEEEKVPIF LPARSFFLVV ERLAIFLSAG WMFFVWGRAG LGGNSGVEPI  420
MSPTAQRSTL PFENNDPVRK HGKGKEIQDC SSFIDESGCL RSLRPFEDFG GKLAQKQTVP  480
RKKVNKKSRP PPSKRKVPCG RVTDLKEHPP VECHLSVDES ESSELRTEQA TLVDDEELEL  540
SELQAGPNPL RCSAHISSTG RHGCPLCKDL LARFPPPSVR MKQPFPTKPW ESSLEMVKKL  600
FQVVRFVYTH FGSMDVHPFT FDEFAQAFHD KSTLDIKLMI SLKNKMGLQG LINGSVREQE  660
FDVNFWIKSL NSLTWVEILR QVLVASGFGS DHHMLNRNFF NKEKNQMVKY GLRPRTLKGE  720
LFTLLSKKGS GGLKVAELAK SPQIIGLNLS GASEVEQLIF STLSSDITLF EKIAPSAYRL  780
RVDPRIKGKE DPRSDTEDSG TVDDDGDASS SGDESDGPQE SYPEHESRIV RWRQKNVHKN  840
MNKCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL IDVVSGAGSV PRLEEPQSVL  900
SNIQRAQSHA SGGKIKKCTR TIYQSSDEYL NRPGSSHSFD SSMQGQSGTL RSQDYIADSG  960
ANESPTGFAH QPQIVLLGSD RRYNNYWLFL GPCRADDPGH RRVYFESSED GHWEVIDSPQ  1020
DLLSLLSVLD IRGTREAYLL ASMKKRQSCL FEGMKKHLED GCVVALTASS DSSHSETSSG  1080
NRYSPKPSSG DGASPLSDID SASVPTYLAG NLQNASSAIG IEVGRRSDEK MLKWERLQAL  1140
DKWIWTSFYS SLTAVKCGKR SFKESLVHCE SCHDLYWRDE KHCRICHSTF EVGFDLEERY  1200
AIHVATCREP EDLYDVPNHK VLPSQLQALK AAIHAIEARM PTAAFAGLWM KSSHNLWVKR  1260
LRRTSSLPEL LQVLVDFVGA IDEDWLYQSS SAVSFSSYLD DITVYFQTMP QTTSAVALWV  1320
VKLDALIAPD LAQADSCRGL GKGSIQTRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153547.1	0.0	homeobox-DDT domain protein RLT3-like isoform X1
TrEMBL	R7WE54	0.0	R7WE54_AEGTA; Uncharacterized protein
STRING	EMT18510	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-134	Homeodomain-like transcriptional regulator