PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18462
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 474aa    MW: 50636.8 Da    PI: 7.3411
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18462genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.18.8e-08211259955
       AP2   9 dkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               ++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  EMT18462 211 HRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 259
               899**********333.44555535555.779999**************98 PP
2AP246.68.6e-15304353355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  EMT18462 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353
               9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.315198267IPR001471AP2/ERF domain
SMARTSM003809.4E-15210273IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-11210269IPR016177DNA-binding domain
CDDcd000185.08E-12210269No hitNo description
Gene3DG3DSA:3.30.730.104.9E-9211268IPR001471AP2/ERF domain
PfamPF008476.2E-5211259IPR001471AP2/ERF domain
CDDcd000186.80E-23302363No hitNo description
SuperFamilySSF541711.05E-17302363IPR016177DNA-binding domain
SMARTSM003802.1E-33303367IPR001471AP2/ERF domain
PROSITE profilePS5103219.111303361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18303361IPR001471AP2/ERF domain
PfamPF008471.2E-9304353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009686Biological Processgibberellin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDMNSGWLGF SLSSSSSAAR GYDAGEGVGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG  60
GSVQYDGPDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSVY DASHADQLKY HHHQDVHHAY  120
PGSPYFQGNG GGGAVIGLDI NNAPPPPHCT GLPDHHYMPA HHGQYSLCPP NQAAGTGAMA  180
AAPMYSSAAG FDGSTNMSIS GIKSWLRQSM HRWTGRYEAH LWDNTCRKEG QTRKGRQGGY  240
DKEEKAARAY DLAALKYWGP TTHINFPLST YEKELEEMKH MTRQEFIAHL RRNSSGFSRG  300
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLSAVTNF  360
DISKYDVKRI CASSHLIGGD LACRRSPTRD APALPSGVSV AVERPEAGAS DNSSDASDGH  420
RGAHLLHGPQ YAHAMKYEAG EGSNGGGNWM PGAARPVAGV PSAHPLPVFA LWND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557671e-170BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186422.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
TrEMBLR7W8P50.0R7W8P5_AEGTA; AP2-like ethylene-responsive transcription factor AIL1
STRINGEMT184620.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-102AP2 family protein