PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16736 Da PI: 9.6315 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.7e-27 | 47 | 95 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye+ EMT18413 47 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDAEVALVVFSPAGRLYEFV 95 8***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-32 | 38 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.815 | 38 | 98 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-28 | 40 | 114 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 40 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-31 | 43 | 99 | No hit | No description |
Pfam | PF00319 | 2.3E-26 | 47 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 60 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 75 | 96 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSEDVGRRRM QQQQQEEEDE SLKAAAAAVE EGGGKRKRKR GRVELRRIED RTSRQVRFSK 60 RRSGLFKKAF ELSVLCDAEV ALVVFSPAGR LYEFVSSDTS VEQIFGRCKD IPDMVIDDLN 120 IAARDSRGYC NIQVVGRYRK GSCPGGMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 2e-17 | 40 | 98 | 2 | 60 | Myocyte-specific enhancer factor 2B |
1n6j_B | 2e-17 | 40 | 98 | 2 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_P | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181042.1 | 4e-91 | MADS-box transcription factor 51-like | ||||
TrEMBL | R7WA23 | 1e-101 | R7WA23_AEGTA; MADS-box transcription factor 56 | ||||
STRING | EMT18413 | 1e-102 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 8e-26 | AGAMOUS-like 14 |