PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18359
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25783.1 Da    PI: 8.6001
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18359genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1976130256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  EMT18359  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 130
               788899***********************************************98 PP
2HD-ZIP_I/II126.11.5e-4076165191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
     EMT18359  76 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 165
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-1950133IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1864133IPR009057Homeodomain-like
PROSITE profilePS5007117.36272132IPR001356Homeobox domain
SMARTSM003891.7E-1674136IPR001356Homeobox domain
CDDcd000867.78E-1476133No hitNo description
PfamPF000468.2E-1776130IPR001356Homeobox domain
PRINTSPR000314.1E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.1E-6112128IPR000047Helix-turn-helix motif
PfamPF021832.1E-11132166IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24132175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MERAEDLGLS LSLSSSLAPR THHVAMLLHA PERRFLEMPL LPAKRVCEAS ADEERSGQRG  60
GGSDDDDGGC GMDGSRKKLR LSKDQSAVLE DSFREHPTLN PRQKAALAQQ LGLRSRQVEV  120
WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLQKEVQ ELRALKLVSP HQYMHMSPPT  180
TLTMCPSCER VSNNNNNNNN NSSNAADRRN GVVEGAICHR PIAVRPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480SRKKLRL
2124132RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749801e-168EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283621e-168KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164579.11e-169homeobox-leucine zipper protein HOX17-like
SwissprotQ01I231e-108HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLR7WEW51e-168R7WEW5_AEGTA; Homeobox-leucine zipper protein HOX17
TrEMBLW5BVG31e-168W5BVG3_WHEAT; Uncharacterized protein
STRINGEMT183591e-169(Aegilops tauschii)
STRINGTraes_2DL_67F1183B2.11e-169(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-66homeobox protein 2