PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 412aa MW: 45651.1 Da PI: 5.8626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 222 | 243 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+ H EMT18191 222 FCAICGKGFKRDANLRMHMHGH 243 6******************877 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 341 | 354 | 6 | 19 |
TTEEESSHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrH 19 Cg++F+rk+nL +H EMT18191 341 CGTTFTRKDNLFTH 354 ************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.098 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.1E-5 | 221 | 273 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.074 | 221 | 248 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 71 | 271 | 304 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 34 | 309 | 331 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MDRGKNIIQD EPPNLSSNPL YYQPSSENLL LDMEMQQPFS ASTLPFDPAP STSIPHMDWN 60 PGTMLDNLSF IEDKIRQAKD VIRSMISDGS QLSTQQQQQP GAFSLHCRTH PFLASPPATV 120 QMANLAASGS GTSSSSVRNR AVSEDHKEEM HSPDYEELFK GLTDYAVEVE GIEIGNSLLV 180 DEHDTKDGNE VGIGIDADSL PPGTYELLQL EEDEILAPQT HFCAICGKGF KRDANLRMHM 240 HGHGDEYKSP AALAKPPRDE SLDHAAIVKR YSCPVAGCKR NRLHKGFLPL KTILCVKNHY 300 KRSHCVKNYT CSRCHAKKFS VMADLKTHEK HCGQVRWVCS CGTTFTRKDN LFTHVGVDGL 360 DSFTEDFLST ENFGSFSFGL GQFDGFPEDN SEGSFMLLPP GHHQSAEKNG ES |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977257.1 | 1e-158 | zinc finger protein STAR3 | ||||
Swissprot | Q943I6 | 1e-103 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | N1R152 | 0.0 | N1R152_AEGTA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | EMT18191 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-88 | C2H2 family protein |
Publications ? help Back to Top | |||
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