PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 25649.9 Da PI: 5.3834 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.1 | 1.5e-34 | 105 | 182 | 3 | 78 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78 ++drhski T++g RdRR+Rls+ +a++fF+Lqd LGfdk+skt+eWLl+q+kpai+ l++ ++ a ++ ++++ EMT18143 105 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDLLGFDKASKTVEWLLTQSKPAIDRLADATQGGAAAAaaGPSKE 182 689************************************************************666663332222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 34.543 | 106 | 164 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.5E-34 | 106 | 183 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTQPSTVIIT IIIIEYPTKN RQYQTLLPIG RHMHPAASSF GEYFQFFPAE MYHHQQLLLQ 60 EEGTLEAVLW QPVTAPAPAE RGEPGNNGAP GPGGAVVGAA RKRPFRTDRH SKIRTAQGVR 120 DRRMRLSVGV AREFFALQDL LGFDKASKTV EWLLTQSKPA IDRLADATQG GAAAAAAGPS 180 KEKGEGATSS GTGFFEDARE EEQDVRDLMK GIGGEGELDW FMSEPAAIGQ PMEGLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-14 | 111 | 164 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-14 | 111 | 164 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM578582 | 8e-74 | KM578582.1 Ischaemum santapaui isolate TK021-6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578583 | 8e-74 | KM578583.1 Ischaemum santapaui isolate TK021-8 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578585 | 8e-74 | KM578585.1 Ischaemum santapaui isolate TK021-2 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578620 | 8e-74 | KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578621 | 8e-74 | KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578622 | 8e-74 | KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186977.1 | 1e-173 | transcription factor TCP12-like | ||||
TrEMBL | A0A3B6D4J2 | 1e-172 | A0A3B6D4J2_WHEAT; Uncharacterized protein | ||||
TrEMBL | R7W9G1 | 1e-172 | R7W9G1_AEGTA; Uncharacterized protein | ||||
STRING | EMT18143 | 1e-172 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-27 | TCP family protein |