PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18104
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 114aa    MW: 12991 Da    PI: 10.158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18104genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT eEd +l+++++q+G g+W++ ++  g+ R++k+c++rw++yl
         EMT18104 15 GKWTMEEDGILANYIAQHGEGSWRSLPKNAGLLRCGKSCRLRWLNYL 61
                     89*****************************99*************7 PP

2Myb_DNA-binding21.65.3e-076793126
                     TSSS-HHHHHHHHHHHHHTTTT.-HHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWkt 26
                     rg++++eEd+l+v++++ +G++ +++t
         EMT18104 67 RGNFSKEEDDLIVKLHAIHGNRyQFTT 93
                     89*******************966665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.984965IPR017930Myb domain
SMARTSM007177.8E-91363IPR001005SANT/Myb domain
SuperFamilySSF466895.72E-221590IPR009057Homeodomain-like
PfamPF002493.3E-151561IPR001005SANT/Myb domain
CDDcd001675.26E-91661No hitNo description
PROSITE profilePS500904.1126290IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-96589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGRAPCCQKL GLKQGKWTME EDGILANYIA QHGEGSWRSL PKNAGLLRCG KSCRLRWLNY  60
LRDGLRRGNF SKEEDDLIVK LHAIHGNRYQ FTTVLVIGFS CQFAIHRRGN KGDN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157341.16e-59myb-related protein P-like
SwissprotP278989e-47MYBP_MAIZE; Myb-related protein P
TrEMBLR7WEN82e-79R7WEN8_AEGTA; Myb-related protein P
STRINGEMT181043e-80(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-44myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]