PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 114aa MW: 12991 Da PI: 10.158 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 15 | 61 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT eEd +l+++++q+G g+W++ ++ g+ R++k+c++rw++yl EMT18104 15 GKWTMEEDGILANYIAQHGEGSWRSLPKNAGLLRCGKSCRLRWLNYL 61 89*****************************99*************7 PP | |||||||
2 | Myb_DNA-binding | 21.6 | 5.3e-07 | 67 | 93 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT.-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWkt 26 rg++++eEd+l+v++++ +G++ +++t EMT18104 67 RGNFSKEEDDLIVKLHAIHGNRyQFTT 93 89*******************966665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.984 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.72E-22 | 15 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-15 | 15 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.26E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.112 | 62 | 90 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-9 | 65 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MGRAPCCQKL GLKQGKWTME EDGILANYIA QHGEGSWRSL PKNAGLLRCG KSCRLRWLNY 60 LRDGLRRGNF SKEEDDLIVK LHAIHGNRYQ FTTVLVIGFS CQFAIHRRGN KGDN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157341.1 | 6e-59 | myb-related protein P-like | ||||
Swissprot | P27898 | 9e-47 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | R7WEN8 | 2e-79 | R7WEN8_AEGTA; Myb-related protein P | ||||
STRING | EMT18104 | 3e-80 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-44 | myb domain protein 12 |