PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 29074.4 Da PI: 5.9364 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 9 | 33 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ gRt++++k++w+ +l EMT18103 9 RWSLIASHLP-GRTDNEIKNYWNLHL 33 5*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.496 | 1 | 37 | IPR017930 | Myb domain |
CDD | cd00167 | 1.92E-7 | 7 | 33 | No hit | No description |
Pfam | PF00249 | 1.8E-7 | 8 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.42E-8 | 8 | 37 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 8 | 34 | IPR009057 | Homeodomain-like |
Pfam | PF06640 | 1.3E-12 | 51 | 260 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MHLVVLTDRW SLIASHLPGR TDNEIKNYWN LHLRRQFHSF KQTYTANNST TITIDINKLS 60 ATNRKRRGGQ APGQLPRSST KKHPVPKPAK PQDGSSPIGA TSSASCLPQS NQDQNQPINI 120 TVSRTFGEPY SGNGLCHMVR ENIDQNGGVL EPNSAIDWIK LWEPNNSMNH IGLLEDESEM 180 EALLSSIDLT ASGHSVIEHG GRSWLEDLLD MDMDWEGFVS HLCGQSAQND LLRTTIPHEM 240 TGSEVSKFEQ FVSWLLSDEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157341.1 | 0.0 | myb-related protein P-like | ||||
TrEMBL | R7W9C6 | 0.0 | R7W9C6_AEGTA; Myb-related protein P | ||||
STRING | EMT18103 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-14 | myb domain protein 12 |