PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17983
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 95aa    MW: 10104.7 Da    PI: 6.5296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17983genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W++ E e++ +a   +  +   +W+++a+ +g g+t+ +++ ++
         EMT17983  4 PWSESENERFERALDTYDRDtpgRWDRVAAAVGGGKTADDVRRHY 48
                     7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-7154IPR001005SANT/Myb domain
PROSITE profilePS500907.236152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-5453IPR009057Homeodomain-like
PfamPF002491.2E-7448IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-11459IPR009057Homeodomain-like
CDDcd001673.56E-7452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAAPWSESEN ERFERALDTY DRDTPGRWDR VAAAVGGGKT ADDVRRHYDR LVDDLRRIEA  60
GANSNGGTHD AGSSSNGAGN NGSRGGSGGS RRPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-174611066RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152537.11e-61protein RADIALIS-like 3
SwissprotQ1A1734e-20RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3B6N3S52e-60A0A3B6N3S5_WHEAT; Uncharacterized protein
TrEMBLA0A453ML012e-60A0A453ML01_AEGTS; Uncharacterized protein
TrEMBLN1QZU62e-60N1QZU6_AEGTA; Uncharacterized protein
STRINGEMT179834e-61(Aegilops tauschii)
STRINGTraes_5DL_EFD6D48C0.14e-61(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-22RAD-like 6