PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17264
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-other
Protein Properties Length: 326aa    MW: 36208.7 Da    PI: 7.5287
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17264genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.7e-081076457
              -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC............TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkkl............gLterqVkvWFqNrRakekk 57
              R +ft  ++  +ee+ ++ +  p++  ++ L++               ++ +qV +WFqNrR+k+k+
  EMT17264 10 RIRFTLAEVVKMEEVLNNlKAMPKRPVIQGLTDDFnaspdrsgddkvPVQYNQVHTWFQNRRYKQKR 76
              666777777777777777677777777777777777777777777778999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.236477IPR001356Homeobox domain
SMARTSM003894.6E-4681IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-61080IPR009057Homeodomain-like
SuperFamilySSF466894.71E-91079IPR009057Homeodomain-like
PfamPF000469.9E-61076IPR001356Homeobox domain
CDDcd000865.25E-45877No hitNo description
PfamPF167193.5E-32125248IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGGEVRTMGR IRFTLAEVVK MEEVLNNLKA MPKRPVIQGL TDDFNASPDR SGDDKVPVQY  60
NQVHTWFQNR RYKQKRRGKR PPARGKKMLP TGAEAQHPAS YRVQSSSPSN SESQSGNTSS  120
DGGLVQLEAK SPRNGAWYDV AAIQSCRFSE TGEQEVQVWF SGFGAEEEEW INVCKSVRLR  180
SLPCIATECV GVLPGDLILC YQEGKEQALY FDAHILQVER RTHDIRGCRC SFLVRYDHDH  240
SEEIVPLRKK AQKWHKRMDM NPDEVTVVPS PPNQGGPSDK LAAPLLITPD STHSDSVTDE  300
QMGDIEAASK GGATSKAHGD KMNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-341252534132SHH1 SAWADEE
4iur_B1e-341252534132SHH1 SAWADEE
4iut_A1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-341252534132SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16875NRRYKQKR
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157952.11e-121protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157953.11e-121protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ74e-77SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR7WDY80.0R7WDY8_AEGTA; Uncharacterized protein
STRINGEMT172640.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-70sequence-specific DNA binding transcription factors;sequence-specific DNA binding