PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT17240

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bZIP

Protein Properties

Length: 412aa MW: 42949.6 Da PI: 4.895

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT17240	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.9	1.9e-12	229	276	9	56
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 rkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ EMT17240 229 RKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKY 276 9************************************99988877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-15	215	285	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-9	229	275	No hit	No description
PROSITE profile	PS50217	10.243	229	277	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-10	229	275	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-9	229	276	No hit	No description
Pfam	PF12498	6.0E-44	292	405	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MERVFSVEEI PDPFWGQPSP RPAGASAAGP ASSGGGGAEG AMNRCPSEWY FQKFLEEAVL 60 DSPAADPGPM AGASGGGVGA AEVKRTAAAV APAPAATGAV VDPVEYNAML KQKLEKDLAA 120 VAMWRASGAM PPERFAASPS LPNADVQHIG TINPIGGNVV PVQNKLAGGA SGVSGPHLVQ 180 NADALVKQAA SSSSREQSED DDMEGEDEIT GNGAPTDQRL RRSFLTGSRK QSNRESARRS 240 RSRKAAHLNE LEAQVSQLRV ENSSLLRRLA DVNQKYNGAA VDNRVLKADV ETLRAKVKMA 300 EDSVKRVTGM SALFPAGSDM SSLSMPFTGS PSEATSDAAV PDDLSAYFST SEAGGNGYMP 360 EMASSAQEDD NFLNEAMDTG KMGRPDSLHR VASLEHLQKR MCGGPASSGS TS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MERVFSVEEI PDPFWGQPSP RPAGASAAGP ASSGGGGAEG AMNRCPSEWY FQKFLEEAVL  60
DSPAADPGPM AGASGGGVGA AEVKRTAAAV APAPAATGAV VDPVEYNAML KQKLEKDLAA  120
VAMWRASGAM PPERFAASPS LPNADVQHIG TINPIGGNVV PVQNKLAGGA SGVSGPHLVQ  180
NADALVKQAA SSSSREQSED DDMEGEDEIT GNGAPTDQRL RRSFLTGSRK QSNRESARRS  240
RSRKAAHLNE LEAQVSQLRV ENSSLLRRLA DVNQKYNGAA VDNRVLKADV ETLRAKVKMA  300
EDSVKRVTGM SALFPAGSDM SSLSMPFTGS PSEATSDAAV PDDLSAYFST SEAGGNGYMP  360
EMASSAQEDD NFLNEAMDTG KMGRPDSLHR VASLEHLQKR MCGGPASSGS TS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365787	0.0	AK365787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2037L16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172895.1	0.0	light-inducible protein CPRF2-like
Swissprot	Q7X9A8	1e-175	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	N1R1X4	0.0	N1R1X4_AEGTA; Regulatory protein opaque-2
STRING	EMT17240	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	5e-33	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]