PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 951aa MW: 104841 Da PI: 4.8283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.1e-12 | 11 | 49 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d++l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l EMT17114 11 DDILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 49 67899*******************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ vk++G++ W+tIa+ ++ gR +kqc++rw+++l EMT17114 55 KGPWSKEEDDIIVEMVKKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 101 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.1 | 1.3e-15 | 107 | 149 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ EMT17114 107 KDAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 149 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.7E-5 | 5 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-9 | 11 | 49 | No hit | No description |
Pfam | PF00249 | 4.9E-10 | 11 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.7 | 11 | 49 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.01E-11 | 11 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 32.215 | 50 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-31 | 52 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-18 | 54 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.44E-16 | 57 | 101 | No hit | No description |
Pfam | PF13921 | 3.5E-18 | 58 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 67 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.934 | 106 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 106 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.91E-11 | 109 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 109 | 156 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 951 aa Download sequence Send to blast |
MAIHCPNGWM DDILSRAVQT YNGKNWKKIA ECFPDRTDVQ CLHRWQKVLN PELIKGPWSK 60 EEDDIIVEMV KKYGPKKWST IAQALPGRIG KQCRERWHNH LNPGINKDAW TQEEEITLIH 120 AHRMYGNKWA ELTKFLPGRT DNSIKNHWNS SVKKKIDSYM SSGLLAQVSR LPLIEHHAHF 180 NSSPAITQQN SEDSDSNAAR EVEDSSGCSQ SSLAMVSCSQ VQDTNLALSC DLHVNADTSK 240 TEARDSQSSM CQEDYTSTEG VASALSEVHC HASSSRFGPD KLLQQDISQR MNLQMDIDET 300 PGNSMFENNQ TICSTSNNER PMLQYEIAPD MPISVLTNVS GAEQKLHFMS EADFSSPNCL 360 KSELWQEISF QSLLSGPDIV DADSLSRLNH HSDTHSSEAD TNFLAAPNPS HTSNPSSMMV 420 AAYGQDPSLS VPQSLISNGL SDAADEKSGE MQVSGSEMIT CMHDSFGDSE QFATPGSTDG 480 RHGASAIIER IPEYGDKQLT DAEEPAASMA KEPPLAQGEA ASDEKQDKGA LFYEPPRFPS 540 MDVPFVSCDL VTSGDLQEYS PLGIRQLMRS TMSVTTPLRL WGSPTHDESP DVVLKSAAKS 600 FISTPSILKK RQRDLSSPTP EKRMERKSRT EQDSGVLGTS SVSAQTSCMH AIKDKAIVTE 660 SVFCTNRSSS FKPLEKKLEF CDENKENLGE SEQAKDGRNA QNNHTVDEHA RGEQCSTANM 720 VNTNDEPPAT VLVEHKGNDI SDHGANAMYQ KMNTNLEALS ACKEAFAKSK SGELIAEKSS 780 PCIQMDYEYV NILADTPGVK RGLESPSAWK SPWFIDMQYK GSYFISPADT TYDALGLMKR 840 INVQSASALA DAREVLASGS QCGNKNFDEE NKENIDAENE TGTGKPQNKI MLTLQAEARV 900 LDFNECATPT QTFTVLSFMY SLVFLGVFYL PIVSTSDSNK VALDICHVPL P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-64 | 11 | 156 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-64 | 11 | 156 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996827 | 0.0 | HE996827.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69800. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153262.1 | 0.0 | transcription factor MYB3R-1-like isoform X1 | ||||
TrEMBL | N1QYF0 | 0.0 | N1QYF0_AEGTA; Myb-related protein 3R-1 | ||||
STRING | EMT17114 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 5e-94 | Homeodomain-like protein |