PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17041
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 409aa    MW: 44697.8 Da    PI: 8.7019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17041genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0591113123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++C+k F r  nL+ H r H
  EMT17041  91 FVCEICNKGFQRDQNLQLHRRGH 113
               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-790113No hitNo description
Gene3DG3DSA:3.30.160.601.3E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.2E-591113IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01791113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94991113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035589142172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001165197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-7172197No hitNo description
SMARTSM00355210177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MMLCDLSSDH HEATGSSSHG GDLGFSSHVL LSPLFAPAAT PTPLLPRPAP PLLGLEEPAR  60
AKRKRSQPGN PDPGAEVIAL SPRTLVATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR  120
QRTVLLPRPG GDGSGAPRKR VYVCPEPTCV HHDPARALGD LTGIKKHFSR KHGEKRWKCE  180
RCAKRYAVHS DWKAHVKNCG TREYRCDCGI LFSRKDSLLT HRAFCDALAE ESARLIAAAN  240
NSITTTTACN NNSGGSSNDI SNMLMPSNSS PLFLPFSSPP HAQNPNPLMF LSQEPHHHQV  300
LPPFQPLTYL DDLPMTTGSG STVSADTVSF RLTPEGSVTM HAGGRHLTRD FLGVDNAGKV  360
EELQMPVPLC AAAYQGRSIG PTTACCATDL TRQYLGRLPP VNEPWSHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34173242372Zinc finger protein JACKDAW
5b3h_F3e-34173242372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866ARAKRKRSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (By similarity). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (By similarity). Seems to repress FTL11 expression (By similarity). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (By similarity). {ECO:0000250|UniProtKB:B1B534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165515.10.0protein indeterminate-domain 12-like
SwissprotB8BGV51e-153EHD2_ORYSI; Protein EARLY HEADING DATE 2
TrEMBLN1R3S70.0N1R3S7_AEGTA; Zinc finger protein MAGPIE
STRINGEMT170410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-98C2H2 family protein