PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 410aa MW: 45376.6 Da PI: 4.8894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.7e-19 | 143 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++G+r+++ +g+W+AeIrdps+ +r++lg+f +aeeAa+a++ +++++g EMT16905 143 SQFRGIRQRP-WGKWAAEIRDPSK---GARVWLGTFNSAEEAARAYDVEARRIRG 193 789*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.13E-31 | 143 | 201 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-21 | 143 | 202 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 144 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-35 | 144 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 144 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 144 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 145 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MCGGAPLADV KVPTVTRKVT KAALWPEKKK PRHGSNEGRR FTGLGGRRGH GVDDNEEDFE 60 AEMEDFEVES GDSDVELRRT RVDEKDDHNE VVEIKSFAAA KSSLSQVIDY RTKRLCDWFG 120 KDDLSTMTTA GFDGSSAKRK RKSQFRGIRQ RPWGKWAAEI RDPSKGARVW LGTFNSAEEA 180 ARAYDVEARR IRGNKAKVNF PKELIIPQKR RARPAAPKSP KLSVAPEPSV MPSVNNLANP 240 NAFIYPSANF ASNQPLALPD NLSFVHAMNS DGPVEASVMN SYSDQGINSF SFSDLEWDYD 300 TKNPDIPSIA PISTITEGAE SALAQSNAYN SVVIAGGAES ALAQSNTNNL VVPHVMENND 360 VDFEAWTRFL IYDGVDEPID SLLNFDVPRD VIGNMDLWSF DDMPMCGEFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 144 | 201 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 144 | 201 | 5 | 63 | ATERF1 |
3gcc_A | 3e-20 | 144 | 201 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196620.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-113 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | N1R3R2 | 0.0 | N1R3R2_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT16905 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 3e-32 | ERF family protein |