PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16810
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 159aa    MW: 17035.5 Da    PI: 11.2723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16810genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000534870123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C  Cg++F +   L  H  +H
  EMT16810 48 YECRTCGRRFATFQALGGHRTSH 70
              99**********99998888777 PP
2zf-C2H215.54.8e-0598120123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C+ Cg  F++   L  H+r+H
  EMT16810  98 HRCGTCGHAFPTGQALGGHMRRH 120
               79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-104772IPR007087Zinc finger, C2H2
SuperFamilySSF576677.11E-848120No hitNo description
PROSITE profilePS5015710.9494875IPR007087Zinc finger, C2H2
SMARTSM003550.224870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34998120IPR007087Zinc finger, C2H2
PfamPF139121.0E-998122IPR007087Zinc finger, C2H2
SMARTSM003550.198120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTKDVASGDT QSPIKLIELL LKLSSPAASS RVIGKNKRVQ LQAAGGAYEC RTCGRRFATF  60
QALGGHRTSH KRPRVRAHGL DLLLGARPGK ARAPMQLHRC GTCGHAFPTG QALGGHMRRH  120
RPAVAAATWT ETATSSSTSC LSVSAQHDDA DWPTLIQFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340453e-35AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624913e-35AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052263e-35AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149673e-35AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058663e-35AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126193e-35CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333223e-35CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152686.11e-113zinc finger protein ZAT11-like
TrEMBLA0A453HU791e-112A0A453HU79_AEGTS; Uncharacterized protein
TrEMBLN1QZV21e-112N1QZV2_AEGTA; Zinc finger protein 1
STRINGEMT168101e-113(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-22C2H2 family protein