PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16662
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 320aa    MW: 34376.6 Da    PI: 4.6747
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16662genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.4e-26958150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              krien++nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++ +l  +s
  EMT16662  9 KRIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSRRLCPFS 58
              79*****************************************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.628161IPR002100Transcription factor, MADS-box
CDDcd002658.68E-34278No hitNo description
SuperFamilySSF554551.09E-27280IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRVKLAIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SRRLCPFSGR  60
HGVEDVLLRY LNMSDNDRGE PIQNREPGGI EREGRGDSEG DIRVSAAAAD LRGTPQPDPA  120
AFGSMVEIDN CEKFLMDMLT RVVERKNYLL SNLAPFDPTA PGMQGGNEAQ MYVHAMKTEE  180
GGGMGTFAGD AAALWGSDDG QNPGHQIFGG TDPMIYLRHV AGMHGGDGDV GGSSQTADPW  240
RQAYSCTELL STLIPNTPFP LMQHCLGPDD GQYLPAMVPA AQDQLEASAS CSYNIPTSDE  300
SGTPVMAYDG GGGVPPPNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17196195MEF2 CHIMERA
6byy_B2e-17196195MEF2 CHIMERA
6byy_C2e-17196195MEF2 CHIMERA
6byy_D2e-17196195MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693351e-103KF469335.1 Brachypodium distachyon MADS-box transcription factor 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194809.10.0agamous-like MADS-box protein AGL66
TrEMBLN1R1Q40.0N1R1Q4_AEGTA; Floral homeotic protein AGAMOUS
STRINGEMT166620.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.19e-49AGAMOUS-like 66