PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT16442

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

G2-like

Protein Properties

Length: 453aa MW: 51407.8 Da PI: 9.3223

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT16442	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.4	1e-15	114	144	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkt+++lm+++gLtl+h+kSHLQkYRl EMT16442 114 AEATPKTVMRLMGIPGLTLYHLKSHLQKYRL 144 57****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-5	113	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-9	114	145	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.0E-13	114	145	IPR009057	Homeodomain-like
Pfam	PF14379	2.4E-22	191	237	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MMIYDRVGVA PIEEKLVQHR LRWFGHIQRR PPEAPVHSGR LKRAENVKSG RGRPNLPWKE 60 SVKRDLKDWS IAKELAMDRV GKYSIHSFNV QQQRGRKRLQ NKSPLNSYTH VYHAEATPKT 120 VMRLMGIPGL TLYHLKSHLQ KYRLSKNLQA QVNVGTNKNT IGCAIAADGM PGTSVPAMIN 180 TNVIPQPEKT MQIGEALQMQ IEVQRQLNEQ LEVQRHLQLR IEAQGKYLQA VLEQAQESLG 240 KQNSGPANLE DAKMKISELV SQVSNECFGS AVTEIKESSS MHRLEPRQIQ FMESSTNNCL 300 TAAGGFINEH RLHSHGMLKA YDDSSIFCRK HSPDHEYQFS LNRSLSERKM GHLHNVNEYH 360 KAEFGSESDM EIQQEYTTPQ KNGRGSTASS ASGSKERDAD RLYLEEPNCK RQAVEHSGFE 420 HPSSGKKLDL NTQNTDDGDQ GYRHFDLNGF SWS

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MMIYDRVGVA PIEEKLVQHR LRWFGHIQRR PPEAPVHSGR LKRAENVKSG RGRPNLPWKE  60
SVKRDLKDWS IAKELAMDRV GKYSIHSFNV QQQRGRKRLQ NKSPLNSYTH VYHAEATPKT  120
VMRLMGIPGL TLYHLKSHLQ KYRLSKNLQA QVNVGTNKNT IGCAIAADGM PGTSVPAMIN  180
TNVIPQPEKT MQIGEALQMQ IEVQRQLNEQ LEVQRHLQLR IEAQGKYLQA VLEQAQESLG  240
KQNSGPANLE DAKMKISELV SQVSNECFGS AVTEIKESSS MHRLEPRQIQ FMESSTNNCL  300
TAAGGFINEH RLHSHGMLKA YDDSSIFCRK HSPDHEYQFS LNRSLSERKM GHLHNVNEYH  360
KAEFGSESDM EIQQEYTTPQ KNGRGSTASS ASGSKERDAD RLYLEEPNCK RQAVEHSGFE  420
HPSSGKKLDL NTQNTDDGDQ GYRHFDLNGF SWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181427.1	0.0	myb-related protein 1-like isoform X1
Refseq	XP_020181428.1	0.0	myb-related protein 1-like isoform X1
TrEMBL	N1QXK1	0.0	N1QXK1_AEGTA; Myb family transcription factor APL
STRING	EMT16442	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	5e-61	myb-related protein 1