PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT16259

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 769aa MW: 87410.2 Da PI: 6.9666

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT16259	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.2	3e-103	320	691	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cAeavs ++++la+ +L+++++++sp+gd +qRla+y++e L+ rl++++s++ + + +++ + + l+ ++l +vsP+l+ s+ N++ EMT16259 320 LRTLLIHCAEAVSVNNHSLASDILKTIRQHSSPSGDDTQRLAFYLAECLEIRLSGNGSQINQNFIATPRN---AAYILKLFHLGLKVSPYLRSSYYFSNKT 417 6789*******************************************************998888877...899999999999************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I + +g+ +vHiiDf+i G+QWp+Ll+++a+R++g p+lRiTg++ p++g e ++t+ rL ++A+ ++vpfe++ +++++e++++++L+++++E EMT16259 418 IIDVSKGKPKVHIIDFGICFGFQWPSLLKQFADREGGRPNLRITGIELPTPGfrPDEINNNTRLRLIEYADMFKVPFEYRQ-ISSKWESITIKDLNIDKDE 517 ***********************************************9977777889****************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 l+Vn+++++++l de++s++s+r++vL+ ++ ++P+++++ + ++n++ Fl rf e ++ y++lfd+++++ pr++e+r+ +Er + + ei n++ace EMT16259 518 LLVVNCIHRMKNLGDETTSINSARNRVLNNIRMMKPNIFIHGVVNGSYNTPFFLSRFKEVMYRYTSLFDMIDKTTPRDNETRMILERDIYKYEILNAIACE 618 ************************************************************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+er+er e+++ W+ r +a F+++pl+ ++++ +++++r+++ ++ v+e+++ lvlgWk+r L+++S W+ EMT16259 619 GSERIERPESYKIWKVRGLRARFEQLPLNPTIVDGIQHIVRQIYHKEVFVDEDDQFLVLGWKGRILYALSTWK 691 ****************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.515	294	671	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-100	320	691	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MANTAGCGAP IESSTAEYND SEFVLHPPTP MSYSPAVSIV SNKIGPQFHN VSCDDTSAGW 60 RLISAAEHPK TDSDVTLSYI EHMLMQETDD KVRAPHGETA IRTVEEPFYE LLGQKYPVLP 120 DILSPCGCDR LKNLNGNVSR LNGKLCSNCS LYISSDDYHP NENSQASQAP WTLSAIVGEA 180 NKIPLGAERM EIGLNINGLS IAEKPSRDNH SPHMNEKETI KDASSEVRGR KVFPDKEDLD 240 LLEGRRSKQT AIFSDEPIRN EAFDKVLLCC EHQLVVDEGI ILQQTMANTS TKYALKDQGK 300 KLATQTTRGI TRRKKEVVDL RTLLIHCAEA VSVNNHSLAS DILKTIRQHS SPSGDDTQRL 360 AFYLAECLEI RLSGNGSQIN QNFIATPRNA AYILKLFHLG LKVSPYLRSS YYFSNKTIID 420 VSKGKPKVHI IDFGICFGFQ WPSLLKQFAD REGGRPNLRI TGIELPTPGF RPDEINNNTR 480 LRLIEYADMF KVPFEYRQIS SKWESITIKD LNIDKDELLV VNCIHRMKNL GDETTSINSA 540 RNRVLNNIRM MKPNIFIHGV VNGSYNTPFF LSRFKEVMYR YTSLFDMIDK TTPRDNETRM 600 ILERDIYKYE ILNAIACEGS ERIERPESYK IWKVRGLRAR FEQLPLNPTI VDGIQHIVRQ 660 IYHKEVFVDE DDQFLVLGWK GRILYALSTW KPTSTIAITG VQDYRDYTEE RGPPAPGWEC 720 SNEAFHHRYQ QHMQQEQMYC HLDHKSVEKL GKLAHQEPQS KGGHLVDPL

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MANTAGCGAP IESSTAEYND SEFVLHPPTP MSYSPAVSIV SNKIGPQFHN VSCDDTSAGW  60
RLISAAEHPK TDSDVTLSYI EHMLMQETDD KVRAPHGETA IRTVEEPFYE LLGQKYPVLP  120
DILSPCGCDR LKNLNGNVSR LNGKLCSNCS LYISSDDYHP NENSQASQAP WTLSAIVGEA  180
NKIPLGAERM EIGLNINGLS IAEKPSRDNH SPHMNEKETI KDASSEVRGR KVFPDKEDLD  240
LLEGRRSKQT AIFSDEPIRN EAFDKVLLCC EHQLVVDEGI ILQQTMANTS TKYALKDQGK  300
KLATQTTRGI TRRKKEVVDL RTLLIHCAEA VSVNNHSLAS DILKTIRQHS SPSGDDTQRL  360
AFYLAECLEI RLSGNGSQIN QNFIATPRNA AYILKLFHLG LKVSPYLRSS YYFSNKTIID  420
VSKGKPKVHI IDFGICFGFQ WPSLLKQFAD REGGRPNLRI TGIELPTPGF RPDEINNNTR  480
LRLIEYADMF KVPFEYRQIS SKWESITIKD LNIDKDELLV VNCIHRMKNL GDETTSINSA  540
RNRVLNNIRM MKPNIFIHGV VNGSYNTPFF LSRFKEVMYR YTSLFDMIDK TTPRDNETRM  600
ILERDIYKYE ILNAIACEGS ERIERPESYK IWKVRGLRAR FEQLPLNPTI VDGIQHIVRQ  660
IYHKEVFVDE DDQFLVLGWK GRILYALSTW KPTSTIAITG VQDYRDYTEE RGPPAPGWEC  720
SNEAFHHRYQ QHMQQEQMYC HLDHKSVEKL GKLAHQEPQS KGGHLVDPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-39	324	691	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153698.1	0.0	scarecrow-like protein 9
TrEMBL	N1QZ73	0.0	N1QZ73_AEGTA; Uncharacterized protein
STRING	EMT16259	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-145	GRAS family protein