PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT16258

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 707aa MW: 80267.3 Da PI: 8.4439

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT16258	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.5	8e-102	324	695	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+avs ++++la+ +L+ +++++sp+gd +qRla+y++ L++rl++++s++ + + +++ + + l+ ++l + vs +l+ s+ N++ EMT16258 324 LRTLLIHCAQAVSVNNHSLASGILKSIRQHSSPSGDDTQRLAFYLADCLETRLSGTGSQINRNFIATPRN---AAYILKLFHLCFTVSHYLRSSYYFSNKT 421 6789*******************************************************988888877...89999999**************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 Il+ +g+++vHiiDf+i G+QWp+Ll+++a+R++gpp+lRiTg++ p +g + ++t+ rL ++A ++vp+e++ +++++e++++e+L++++gE EMT16258 422 ILDVSKGKSQVHIIDFGICFGFQWPSLLKQFADREGGPPKLRITGIELPMPGfrPDGRKNNTQLRLVEYAGMFKVPLEYRQ-ISSKWESISIEDLNINKGE 521 **********************************************999999999******************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l+Vn++ +++++ de+ s++s+r++vL+++k ++Pkv+++ + ++n++ Fl rf e +++y++lfd+l+++ pr++e+r +Er + + e nv+ace EMT16258 522 VLVVNCINRMKNIADETISINSARNRVLHTIKMMKPKVFIHGVVNGSYNTPFFLSRFKEVMYHYASLFDMLDKTTPRDNETRLILERDIYKYEMLNVIACE 622 ************************************************************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+er+er e+++kW+ r +a F+++pl+ +++k +++++r+++ + v+ee++ lvlgWk+r ++++S W+ EMT16258 623 GSERIERPESYKKWKVRSLRARFEQLPLNPTIVKGVQHIVRQIYHKDLFVDEEDQFLVLGWKGRIVYALSTWK 695 ****************************************88899*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.505	298	675	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-99	324	695	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MANTACGGAY CSQDFIESST AKYNDSEFIL HPPTPMSNYP APSIASNKIG SQFCNVSCDD 60 TSAGWRQTSV AEHPRTDSDV TLSYIEQMLM QDIDYKVRAP HGETAIRSME EPFYELLGQK 120 YPVLPDLLPL CGCGHLENLN GNVSRLNGKL SCNCSVYISS DDYHPNENSQ GSQAPWTLSA 180 IVGEAKQFPL GAERMELGLN INGLSIAKKP SRDYHSPHMH DRDAMKNGSF EVRGRKVYPG 240 IEELDLLEGR RNKQIAIFSD EPTRNEAFDK VLLCSEQKPI DEGTISQRTM SDTSTKYAQK 300 DQGRKPARQK TRGKTRKKKE VVDLRTLLIH CAQAVSVNNH SLASGILKSI RQHSSPSGDD 360 TQRLAFYLAD CLETRLSGTG SQINRNFIAT PRNAAYILKL FHLCFTVSHY LRSSYYFSNK 420 TILDVSKGKS QVHIIDFGIC FGFQWPSLLK QFADREGGPP KLRITGIELP MPGFRPDGRK 480 NNTQLRLVEY AGMFKVPLEY RQISSKWESI SIEDLNINKG EVLVVNCINR MKNIADETIS 540 INSARNRVLH TIKMMKPKVF IHGVVNGSYN TPFFLSRFKE VMYHYASLFD MLDKTTPRDN 600 ETRLILERDI YKYEMLNVIA CEGSERIERP ESYKKWKVRS LRARFEQLPL NPTIVKGVQH 660 IVRQIYHKDL FVDEEDQFLV LGWKGRIVYA LSTWKPSESN NESTDDI

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MANTACGGAY CSQDFIESST AKYNDSEFIL HPPTPMSNYP APSIASNKIG SQFCNVSCDD  60
TSAGWRQTSV AEHPRTDSDV TLSYIEQMLM QDIDYKVRAP HGETAIRSME EPFYELLGQK  120
YPVLPDLLPL CGCGHLENLN GNVSRLNGKL SCNCSVYISS DDYHPNENSQ GSQAPWTLSA  180
IVGEAKQFPL GAERMELGLN INGLSIAKKP SRDYHSPHMH DRDAMKNGSF EVRGRKVYPG  240
IEELDLLEGR RNKQIAIFSD EPTRNEAFDK VLLCSEQKPI DEGTISQRTM SDTSTKYAQK  300
DQGRKPARQK TRGKTRKKKE VVDLRTLLIH CAQAVSVNNH SLASGILKSI RQHSSPSGDD  360
TQRLAFYLAD CLETRLSGTG SQINRNFIAT PRNAAYILKL FHLCFTVSHY LRSSYYFSNK  420
TILDVSKGKS QVHIIDFGIC FGFQWPSLLK QFADREGGPP KLRITGIELP MPGFRPDGRK  480
NNTQLRLVEY AGMFKVPLEY RQISSKWESI SIEDLNINKG EVLVVNCINR MKNIADETIS  540
INSARNRVLH TIKMMKPKVF IHGVVNGSYN TPFFLSRFKE VMYHYASLFD MLDKTTPRDN  600
ETRLILERDI YKYEMLNVIA CEGSERIERP ESYKKWKVRS LRARFEQLPL NPTIVKGVQH  660
IVRQIYHKDL FVDEEDQFLV LGWKGRIVYA LSTWKPSESN NESTDDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-42	328	695	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153698.1	0.0	scarecrow-like protein 9
TrEMBL	N1R3J5	0.0	N1R3J5_AEGTA; Uncharacterized protein
STRING	EMT16258	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-147	GRAS family protein