PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16215
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-PHD
Protein Properties Length: 1236aa    MW: 136313 Da    PI: 4.578
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16215genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox339.9e-11582628652
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                f +   e+L+++F  ++yps++ +e LA++lgLt rqV  WF   R
  EMT16215 582 HFGPVINERLNQYFTTDQYPSRAVKESLAQELGLTFRQVNKWFESTR 628
               566666789**********************************8766 PP
2Homeobox34.82.8e-11106511051353
                HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53  
                ++L e F++++yps++ +e LA++lgLt rqV  WF  rR 
  EMT16215 1065 QRLHEQFKSDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1105
                6899***********************************96 PP
3PHD39.21.6e-13240295151
               SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
       PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
               +C+ C+   ++ +++++lCdg C++ fH++Cl+++l ++++peg   wlC+ C++k
  EMT16215 240 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 295
               599999854555********66*********************999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-13231298IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-12237294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.878238295IPR019787Zinc finger, PHD-finger
CDDcd155043.48E-26240292No hitNo description
SMARTSM002491.9E-10240293IPR001965Zinc finger, PHD-type
PROSITE patternPS013590241292IPR019786Zinc finger, PHD-type, conserved site
PfamPF006281.4E-10241295IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.601.5E-12571628IPR009057Homeodomain-like
SuperFamilySSF466898.13E-11571629IPR009057Homeodomain-like
PROSITE profilePS5007113.2574634IPR001356Homeobox domain
SMARTSM003891.5E-9576638IPR001356Homeobox domain
CDDcd000869.87E-11577628No hitNo description
PfamPF000463.6E-8581628IPR001356Homeobox domain
PROSITE profilePS5007113.97710501110IPR001356Homeobox domain
SMARTSM003894.8E-1010531114IPR001356Homeobox domain
CDDcd000863.46E-1110551108No hitNo description
SuperFamilySSF466894.28E-1110591118IPR009057Homeodomain-like
PfamPF000461.0E-810651105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-1210651119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1236 aa     Download sequence    Send to blast
MDKSNTSGCA EDTIETRSYA NSSLNPEALK HQSFPFPYTS LSGERKNFKR AANRGRKGSR  60
VLSSRTYPLK SSESTVRVLR SRSVADKSPS DAVQTPTERA AKKPPSDSVD TLVKPAAKRI  120
KRDRPTKGGP DDELSKIRKR IRYILNRMNY HQSFLEAYAS EGWKNQSVSC NIEILLTHTQ  180
TCSLEKIRPE KELERAKVEI VRCKLRIREA FQNLDHLLTV GKLEESLFDS EGKISSDDIV  240
CATCSLQEAT LNNDIILCDG ACDRGFHQNC LNPPLLTKDI PEGEEGWLCP ACDCKIDCIE  300
LINELQGTDL DINDSWEKVF PEASAVAHGP MQNDVADLPS DDSEDDDFDP NISEEHVAGH  360
AEGSSEEDGD EGSDSDDSNF MTSSDNSEHV KEKVKVDDLG LPSEDSEDDD YDPAGPDSDK  420
DIEEKQDESD FTSDSDEFCA EITKSCSKDE VSSGPKVGGR TNDLEGAPVR PNTSMSHSKD  480
LEIDPDVILP STKRQVQRLD YKKLYDDTYG EAPSESSDGD EWSGKSTLKE ENEERNEVDS  540
FARKSSRGTR EVHPDGFHGL VNDQHAGGLT SDGSNSKAKK RHFGPVINER LNQYFTTDQY  600
PSRAVKESLA QELGLTFRQV NKWFESTRHA RAAAMKNGSQ LEKQSNSRKK KSSDATHMEV  660
KDQPNACKEE GIRQHSPVKQ DTDGGQRTHV PPESSQSYTK TPGLVGCPKS ESRENHEKNT  720
SSKYVGMSTD GSAEDQILGL EPEDEGSDSD DLNFVTRSGN SEPLKNREKV DDLGLPSAYS  780
EDDDYDSDEV IEMMQSSSDE SNFTTSSDNP EDVKEKVDGL GLPSEDSEDD DYDPAGPGSD  840
EDIGKKQSSS EKSHSSDKSE NRKTKRKVDD LGLPSEDSED DDYDPASPDS DKDIEEKQDE  900
SDFSSDSDDF CVEIAKSCSG QEGVPSGAKV GGDRTDDLEG TTICANAAIS NLPSKDPEMD  960
QYVVLPVSAR QKVQSPDSKK LAAYGKAPSD SSYSEELSKK GTPEKDNGKE SEAGSFMRQI  1020
NEFTPQRSQQ SFHGSVNGQN AEELLTPNGS STTGQKRQYG PIINQRLHEQ FKSDQYPSRA  1080
VKESLAQELG LTFRQVEKWF ESRRRHIRVA SKKSSTHVEN HSTKENPNVC KSDAVNEDTP  1140
SGILNEGITQ DGPLKQDIGG GLRTNASPPN SSQRYTTPLV RRPKGESREN HMKNTSSSSA  1200
SSPKGSDAGY AVLALEALDE KTRSKMLQEL KKRKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141KIRKRIR
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686280.0AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161929.10.0homeobox protein HOX1A-like
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLR7WAL10.0R7WAL1_AEGTA; Homeobox protein HOX1A
STRINGEMT162150.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-71Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]