PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16101
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 321aa    MW: 35381.2 Da    PI: 6.5984
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16101genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.2e-32251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++ d++++ l++w + +nsf+v+d   f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll +i 
      EMT16101  25 FVAKTYQMVCDPRTDALVRWGKGNNSFLVTDVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 112
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
      EMT16101 113 RRKK 116
                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-4921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.39E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-162548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2725114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCGHGDL QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVTDVAGFS  60
QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR IVRRKKRGEA  120
GVGASCSSVV GGGEQHQHVV ANMGDEVEEE EDEEGREALL EEVQRLRQEQ TAIGEQLAKM  180
SRRLQATERR PDRLMSFLSK LAEDPNATSL HLLEQAVEKK RQRMQCPSRD FTSFPIALPL  240
QPAPSPPPPP LLALGDAAMG GVRVWQWAEP MPLTVRPSAS SGVQQVPEFE GGRSGSGMGI  300
TDGGTAVETP FPFCLLGQCF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212511429129Heat shock factor protein 1
5d5v_B2e-212511429129Heat shock factor protein 1
5d5v_D2e-212511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085530.0KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162679.10.0heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-123HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A3B6GRV50.0A0A3B6GRV5_WHEAT; Uncharacterized protein
TrEMBLA0A453F3650.0A0A453F365_AEGTS; Uncharacterized protein
TrEMBLN1QX490.0N1QX49_AEGTA; Heat stress transcription factor C-1a
STRINGEMT161010.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-53heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]