PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16030
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34578.2 Da    PI: 9.7178
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16030genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.3e-151553341
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
              i n+s r   f kR++g++KKA EL vLCda+ +v+++ 
  EMT16030 15 IPNDSTRRNRFKKRLKGLMKKADELAVLCDAKTCVLVYD 53
              789999999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-12164IPR002100Transcription factor, MADS-box
CDDcd002661.32E-21289No hitNo description
PROSITE profilePS5006614.872554IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-7727IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-18898IPR002100Transcription factor, MADS-box
PfamPF003194.4E-141554IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-72742IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-74263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MARKKVARKA TLQYIPNDST RRNRFKKRLK GLMKKADELA VLCDAKTCVL VYDEGKAAPK  60
VFPSQAEAVG ILNQFKSMPE LGRCKEVMNQ KRFISKRIDK LREQVDRTRR ECEDGEIRSL  120
LHKTMHGDLS GLVGLNIEEL TKVGYKVDVL LKSISERMAK IHSQAPPPAP CVATGSIDMG  180
SPALYPAPPQ QESRLDMVSS GGDLDTLVYG GYASANFSSS GMMMQMQSID MGFGSSPFPP  240
IPSFVLQNHK MTTFAHQEDI VADPRCSPSI WGLVRALFLP HAQQDHIFFI MCVRGHLARQ  300
DNIMAAWPRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174675.11e-145agamous-like MADS-box protein AGL80
TrEMBLN1QYY40.0N1QYY4_AEGTA; MADS-box transcription factor PHERES 2
STRINGEMT160300.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-23AGAMOUS-like 38