PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT15779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NF-YA | ||||||||
Protein Properties | Length: 261aa MW: 28594.7 Da PI: 9.982 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.7 | 1.6e-32 | 157 | 213 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF EMT15779 157 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 213 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-35 | 155 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.934 | 156 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-26 | 158 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 159 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 161 | 181 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-23 | 190 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAAWGCKQQQ LNSKKSSKER KRLRRGCWVH LLERGCRREV ESGRRRQSNP GGSGGDGVFN 60 CDHRADEQQK QAAAQGNQEE APATSIGSQA MVATPSTDYV TPYGHQEACH AMGQIAYPTV 120 DPFYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI LRRRQSRAKA 180 ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK DKQNGVAPRS 240 SGQSSQSPKG ATSADKSANH E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 156 | 229 | 1 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009624 | 0.0 | BT009624.1 Triticum aestivum clone wre1n.pk0143.h2:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186181.1 | 1e-147 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
Refseq | XP_020186182.1 | 1e-147 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
Swissprot | Q84JP1 | 6e-42 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | N1R0Y8 | 0.0 | N1R0Y8_AEGTA; Nuclear transcription factor Y subunit A-7 | ||||
STRING | EMT15779 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6555 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-38 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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