PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT15631

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HB-other

Protein Properties

Length: 1021aa MW: 111670 Da PI: 6.5262

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT15631	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	2e-10	601	640	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e LA++lgLt +q++ WF R EMT15631 601 QKLKAYFEKEPYPSRPAKESLAQELGLTFNQITRWFSSTR 640 689*********************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.746	586	646	IPR001356	Homeobox domain
SMART	SM00389	3.0E-10	587	650	IPR001356	Homeobox domain
CDD	cd00086	5.00E-10	600	644	No hit	No description
SuperFamily	SSF46689	5.56E-10	600	644	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-11	601	651	IPR009057	Homeodomain-like
Pfam	PF00046	7.6E-8	601	640	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MTIFEGQAWR SGEVLHTCGK RKWFYKAYPK SPRIGLSVPA EKESEKVGNG SPSSPTKGKR 60 GRKGSQIIAN KKYPLRSAHS SARVLRSTSK DKSKTPNEPV SPLRSAHSSP RVLRSTPKNK 120 SKTPKKQVNS LRSAHSSARV LSSTLKKKVP NEPVNDSTAA QPAARKRKRG RPSNAASPKN 180 ECIKIRQRVR YILNRMNYEQ SFIQAYAGEG WKGQSLEKIR PEKELERAKA EILRCKLRIR 240 EAFRNMDSLL LEGKLDESLF DSEGEISSED IFCAICASKH VTLKNDIILC DGGDEGWLCP 300 ACDCKLDCID LLNELQGSTL AIHDSWEKVF PESTSNGLNQ IGASDLPSDD SEEDYDPTLA 360 EGDTVDENKS SAEDGDEGSD SDDLDFITSS DESEPSKKKR SESKNKNTVN DLALPSDDSE 420 DDDFDPEGPN SSEDQKTKTN SDESDFTSDS DDFCAEISKS SGKDKVSAPS FSDQTNGVDI 480 MEAELEQDSV LPASNRRQVG HLDYKKLYDE AYGKETTDSS DEEEWSGHSP NGNPEDSDTD 540 SFAGPLKPAK TRRARGGHQN NERTPQSERH SGSVSEQHPE VLSNGTSSTV RKKGYGPIVN 600 QKLKAYFEKE PYPSRPAKES LAQELGLTFN QITRWFSSTR HYSRVTAAKK GKRSENYTAE 660 NNGIAADSIQ QREPNDSLLG KPNVDRNGIV SEERMAQKNL DEGEKEDTPF RQHISCEQTL 720 DGTPANKHNT ANSREVDSPI GAPGGNQQSG TSRNAEDTPL GQDIGCEQTV VAVNQNCTIG 780 SSNVGSPKGV PGGNKRLNNS PRSVGSPRRG SAEKNIPGLE HVDEARRKAI LRELRKMKAA 840 GRCCLDVVME LLIVATSCKV ENVIRRERQR KQHEQEATTE KVSAKGVVDV EEDVSPPLSP 900 VAPSPSILPL TRKPPSAPPA TDNDPIAELG DSGCIYGNGG AGRRGVRLAA IPKGTKKHGQ 960 LRRPVCLGPD QVDTTCEELK TDNKRLKKTG GSSSHQSIGL DDEEEEVAGE IGRAIVLMNN 1020 P

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MTIFEGQAWR SGEVLHTCGK RKWFYKAYPK SPRIGLSVPA EKESEKVGNG SPSSPTKGKR  60
GRKGSQIIAN KKYPLRSAHS SARVLRSTSK DKSKTPNEPV SPLRSAHSSP RVLRSTPKNK  120
SKTPKKQVNS LRSAHSSARV LSSTLKKKVP NEPVNDSTAA QPAARKRKRG RPSNAASPKN  180
ECIKIRQRVR YILNRMNYEQ SFIQAYAGEG WKGQSLEKIR PEKELERAKA EILRCKLRIR  240
EAFRNMDSLL LEGKLDESLF DSEGEISSED IFCAICASKH VTLKNDIILC DGGDEGWLCP  300
ACDCKLDCID LLNELQGSTL AIHDSWEKVF PESTSNGLNQ IGASDLPSDD SEEDYDPTLA  360
EGDTVDENKS SAEDGDEGSD SDDLDFITSS DESEPSKKKR SESKNKNTVN DLALPSDDSE  420
DDDFDPEGPN SSEDQKTKTN SDESDFTSDS DDFCAEISKS SGKDKVSAPS FSDQTNGVDI  480
MEAELEQDSV LPASNRRQVG HLDYKKLYDE AYGKETTDSS DEEEWSGHSP NGNPEDSDTD  540
SFAGPLKPAK TRRARGGHQN NERTPQSERH SGSVSEQHPE VLSNGTSSTV RKKGYGPIVN  600
QKLKAYFEKE PYPSRPAKES LAQELGLTFN QITRWFSSTR HYSRVTAAKK GKRSENYTAE  660
NNGIAADSIQ QREPNDSLLG KPNVDRNGIV SEERMAQKNL DEGEKEDTPF RQHISCEQTL  720
DGTPANKHNT ANSREVDSPI GAPGGNQQSG TSRNAEDTPL GQDIGCEQTV VAVNQNCTIG  780
SSNVGSPKGV PGGNKRLNNS PRSVGSPRRG SAEKNIPGLE HVDEARRKAI LRELRKMKAA  840
GRCCLDVVME LLIVATSCKV ENVIRRERQR KQHEQEATTE KVSAKGVVDV EEDVSPPLSP  900
VAPSPSILPL TRKPPSAPPA TDNDPIAELG DSGCIYGNGG AGRRGVRLAA IPKGTKKHGQ  960
LRRPVCLGPD QVDTTCEELK TDNKRLKKTG GSSSHQSIGL DDEEEEVAGE IGRAIVLMNN  1020
P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	167	KKKVPNEPVNDSTAAQPAARKRK
2	163	169	ARKRKRG
3	864	871	RRERQRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251701	0.0	AK251701.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120a17, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179245.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179246.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179247.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179248.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179249.1	0.0	homeobox protein HAZ1-like
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	N1R0R2	0.0	N1R0R2_AEGTA; Homeobox protein HOX1A
STRING	EMT15631	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-62	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]