 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EMT15563 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
| Family | C2H2 | ||||||||
| Protein Properties | Length: 120aa MW: 12934.4 Da PI: 8.2398 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 14.3 | 0.00012 | 34 | 54 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +C++ F+++ L H+++H
EMT15563 34 CVYCDRKFRSSQALGGHQNVH 54
*******************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 6.91E-9 | 28 | 68 | No hit | No description |
| PROSITE profile | PS50157 | 11.344 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 34 | 56 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 120 aa Download sequence Send to blast |
MDRASRAQED ELSLELSLAA VAPAPGTSDG FFLCVYCDRK FRSSQALGGH QNVHKHERAV 60 AWRMREVAAA AVTRALDVVS SRKAGKATSY SVRKPEDPSG SNEGGSSSER GEQVDLSLRL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020152481.1 | 5e-83 | zinc finger protein 2-like | ||||
| TrEMBL | R7W5Q1 | 1e-81 | R7W5Q1_AEGTA; Zinc finger protein 4 | ||||
| STRING | EMT15563 | 2e-82 | (Aegilops tauschii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP183 | 36 | 274 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57520.1 | 4e-12 | zinc finger protein 2 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|